Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1734 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAATCACCAGTCTGCAACTTTCCAATCACAAGGACATTGTTTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCGGCTGCTGTTTTTGATATTCAACGTGCAACTCATTCGGAGGGTCACATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATATCCTCGGCCATATGGTATCCCATTGATACTGGATTGTTTGTCACTGGTTCATACGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGGGCATTTTCTCACACATTATCTGGACACCGTGATGGTGTAATGAGTGTCGAATGGTCAGCTTCTAGTGAGTGGGTTTTGATCACTGGAGGATGTGATGGAGCAATACGTTTTTGGGACATCAGACGAGCTGGATGTTTTCGTGTTCTAGATCAGTCTCAATCCCAGCTTGGGAGACGCCCACCTATTTCAGGATGGACTGCAAATAAGCTATCAACATCTAAGTCCCTCATGGCCAGCCAAGGTTCAAATATGAGATCTCGCGTACCTCATAAGAAACTAGCTAATGGAAACACAACAAAGCCATCATCTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCTAGTCAGGATCGAGCTGTTTCTCACTATGGTGCTGTTACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTTGAATCCGGATGTAATACGCTCGTGAATTATGAAACAATGCGGTTACAGACCAATAAGCCATTGCAATTAGCCACCTCTCAAGATTCAGCCCTCGTATTTGCTCCATGCATGGCAACTGTTAAAGCATTTGATATGTGGACAGGGAAAACATCCCTGACATTCAGCGGCCATTACGAAGGTGTGAACTGTTGCTGGTATAGTTTCCAGGATCAGGTACGGCCATTTTCCTCTTCCCTTTTCATCTGCATTCATCACTTGTAA 1278 43.82 MWKDIRDREAGKLRPNSFANRVKSDRITSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGHIAKHQCIFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLMASQGSNMRSRVPHKKLANGNTTKPSSTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSQDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYSFQDQVRPFSSSLFICIHHL 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80666498 80673065 + Tan0000324.6 Tan02g1734 744360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1734 425 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 219 - -
Tan02g1734 425 SUPERFAMILY WD40 repeat-like 39 412 IPR036322 GO:0005515(InterPro)
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 SMART WD40_4 177 217 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 SMART WD40_4 85 130 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 SMART WD40_4 32 72 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 SMART WD40_4 300 338 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 MobiDBLite consensus disorder prediction 254 288 - -
Tan02g1734 425 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 Pfam WD domain, G-beta repeat 180 217 IPR001680 GO:0005515(InterPro)
Tan02g1734 425 Gene3D - 1 418 IPR015943 GO:0005515(InterPro)
Tan02g1734 425 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Tan02g1734 425 MobiDBLite consensus disorder prediction 254 295 - -
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 133 - -
Tan02g1734 425 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 410 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Tan02g1734 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Tan02g1734 425 FunFam Transducin/WD40 repeat-like superfamily protein 2 264 - -
Tan02g1734 425 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Tan02g1734 425 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Tan02g1734 425 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1734 K10570 - - csv:101209203 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1732 Tan-Chr2:80666498 Tan02g1734 Tan-Chr2:80666498 3.10E-220 dispersed
Tan02g1733 Tan-Chr2:80666498 Tan02g1734 Tan-Chr2:80666498 1.80E-250 tandem
Tan02g1734 Tan-Chr2:80666498 Tan02g1735 Tan-Chr2:80668817 4.70E-150 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36