Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1743 ATGAAAGCAGCCTCGAATCTCAGTTCGTCACTTCCCCCTTCGCCGTCGCACTACAGGACCACCGCTGTCTTCACTCCTCATCGGCGGATTGCTTCACCGTCAACAGCCGCCGCCGGCGCTCTCTCGTCGTGTCGTACAAATTTGACTCGCCTTCATCAGCATCCATCAGCGATTTTGCCTCCACGTTGCAATGTGAGGGAGACCGTGCCGGATCAAGAAATGGCGTCCATCGATGAACAAGACCCACGCATAGCCAAAATCGCCAAGGCCATTCGAGTTATTCCTGATTTTCCCAAACCAGGGATTTTGTTTCAGGACATTACTACGTTGCTTCTTGATACAAAGGCCTTCAGGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAAGATATCTCTGTTGTTGCTGGAATTGAGGCGAGAGGTTTCATTTTTGGCCCTCCCATCGCTCTGGCTATTGGTGCAAAATTTGTTCCGATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCCTTAGAGTATGGAACAGATAAAATAGAGATGCATGTAGGAGCTGTTGAAGCTGGAGAACGTGCTCTTGTGATAGATGATCTCATCGCAACTGGGGGAACCTTGTGTGCAGCAATAAGACTACTTGAGCGAGTTGGCGTCAATGTAGTCGAGTGTGCTTGTGTGATCGAGCTGCACGGACTAGAGGGACGTGAAAAATTGGGAGACAAACCTCTATTTGTTCTAGTTAACGCAGCGTGA 768 48.96 MKAASNLSSSLPPSPSHYRTTAVFTPHRRIASPSTAAAGALSSCRTNLTRLHQHPSAILPPRCNVRETVPDQEMASIDEQDPRIAKIAKAIRVIPDFPKPGILFQDITTLLLDTKAFRDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLCAAIRLLERVGVNVVECACVIELHGLEGREKLGDKPLFVLVNAA 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 81257693 81260498 - Tan0018086.2 Tan02g1743 744369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1743 255 Hamap Adenine phosphoribosyltransferase [apt]. 87 254 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Tan02g1743 255 FunFam Adenine phosphoribosyltransferase 1 75 254 - -
Tan02g1743 255 MobiDBLite consensus disorder prediction 1 20 - -
Tan02g1743 255 NCBIfam adenine phosphoribosyltransferase 88 253 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Tan02g1743 255 SUPERFAMILY PRTase-like 87 250 IPR029057 -
Tan02g1743 255 CDD PRTases_typeI 121 251 IPR000836 -
Tan02g1743 255 Pfam Phosphoribosyl transferase domain 120 235 IPR000836 -
Tan02g1743 255 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 78 253 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Tan02g1743 255 Gene3D - 74 254 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1743 K00759 - - csv:101208231 405.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1743 Tan-Chr2:81257693 Tan07g1842 Tan-Chr7:69958177 7.40E-74 dispersed
Tan02g1742 Tan-Chr2:81257693 Tan02g1743 Tan-Chr2:81257693 4.70E-99 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan05g1228 . 65 551 PRT Gene Family AT2G16570 84.0 5.9e-241 830.9
Tan05g1228 . 71 551 PRT Gene Family AT4G34740 84.9 1.1e-239 826.6
Tan05g1228 . 71 524 PRT Gene Family AT4G38880 75.2 5.0e-197 684.9
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan07g1841 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan07g1842 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan01g2010 . 5 97 PRT Gene Family AT4G22570 84.9 8.2e-43 170.2
Tan02g1742 . 5 97 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g1743 . 78 170 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g2731 . 11 100 PRT Gene Family AT4G22570 78.9 3.0e-37 151.8
Tan07g1841 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan07g1842 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan01g2010 . 1 96 PRT Gene Family AT4G12440 82.3 1.3e-39 159.5
Tan02g1742 . 1 96 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g1743 . 74 169 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 4 99 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan11g1087 . 1 186 PRT Gene Family AT1G71750 67.0 2.1e-71 266.2
Tan01g3234 . 16 469 PRT Gene Family AT1G55810 85.5 1.9e-226 782.3
Tan07g0116 . 19 482 PRT Gene Family AT1G55810 74.6 4.3e-202 701.4
Tan04g1998 . 19 482 PRT Gene Family AT1G55810 73.1 2.6e-199 692.2
Tan01g3234 . 66 468 PRT Gene Family AT3G27440 77.4 5.8e-185 644.4
Tan07g0116 . 80 482 PRT Gene Family AT3G27440 75.4 1.5e-180 629.8
Tan04g1998 . 80 482 PRT Gene Family AT3G27440 74.7 9.0e-178 620.5
Tan07g0116 . 1 482 PRT Gene Family AT3G27190 87.0 1.7e-249 859.0
Tan04g1998 . 1 482 PRT Gene Family AT3G27190 84.9 2.9e-244 841.6
Tan01g3234 . 3 468 PRT Gene Family AT3G27190 74.6 1.3e-209 726.5
Tan03g0911 . 3 289 PRT Gene Family AT3G53900 68.3 1.3e-109 393.7
Tan03g0913 . 3 276 PRT Gene Family AT3G53900 66.4 8.3e-101 364.4
Tan03g0912 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan03g0914 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan01g3234 . 1 469 PRT Gene Family AT4G26510 84.3 1.5e-234 809.3
Tan07g0116 . 7 482 PRT Gene Family AT4G26510 76.1 1.5e-213 739.6
Tan04g1998 . 11 482 PRT Gene Family AT4G26510 74.4 2.5e-208 722.2
Tan07g0116 . 1 482 PRT Gene Family AT5G40870 87.2 7.9e-250 860.1
Tan04g1998 . 1 482 PRT Gene Family AT5G40870 85.1 9.3e-243 836.6
Tan01g3234 . 3 471 PRT Gene Family AT5G40870 73.7 2.0e-208 722.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139