Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1771 ATGGCTGAGACAGACAACTGTGTCCGTGTCACTCGTGCTTCTAAGAAGAGAGCTGCAGCGGTCGCCATGGCCGAGGATCAGCCCGCTAATAAGAAGCGGGTCGTTCTCGGTGAGCTTTCGAACATTCAGAATGTGTCTGGGTCACTGCCACAGAAGAGGAGGGCCAAGTCCCAGATTACCAAATGCAAACCTAAGAAGAGAAGTAGGATTGGTGTTGCTCCAACGATCAAGACGACTGTTGTTATTGAAGATAATGAACCCAAGTTGAGCGTTGATGATCTTTTGGACGACCCAGAGATGAAGGGGCCTTATTCCTCGGATATTTATGCTTATCTTCGCAAGATGGAGGCGGAACCCAAAAGAAGGCCAATTCCAAATTACATTGAGAAGATTCAGACGGATGTAAGTGCCAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCCGAGGAATACAAACTCGGCTCTGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGACTTCAATTGTTGGGCGTTTCTTCAATGCTGATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGCTACATCACAGATAATACTTATAGAAGGGATGAGGTTGTGAAGATGGAGGCCGATATACTCAAGTCTTTGAACTTTGAAATGGGGAATCCTACTGTCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAACACCAAGTCTGCAGTTGGAATTCTTGGGTTACTACCTTGCTGAGCTTAGCCTACTGGACTATAATTTTGTGAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTGTTTCTTGCAAAATTCATCATCCGGCCGAAGCTGCATCCTTGGGGTTCAAACATGCAACAATACACAGGCTACAAGCCAGCCGATCTGAGGCCATGTGTCCTTCTGTTACATGATTTGTATATGGCCAGAAGAGGGGGCTCTCTGATAGCTGTGAGAGAGAAATACAAGTTGCATAGGTTCAAATGTGTTGCAATGATGCCTTCACCCCCTGAGATACCGTTTTCCTATTTTGAAGAAGCTTAG 1119 44.68 MAETDNCVRVTRASKKRAAAVAMAEDQPANKKRVVLGELSNIQNVSGSLPQKRRAKSQITKCKPKKRSRIGVAPTIKTTVVIEDNEPKLSVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTVKTFLRRFTNIAQEDFKTPSLQLEFLGYYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIRPKLHPWGSNMQQYTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82199619 82201937 + Tan0005706.1 Tan02g1771 744397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1771 372 FunFam Cyclin A1 225 357 - -
Tan02g1771 372 Gene3D - 107 357 - -
Tan02g1771 372 CDD CYCLIN_AtCycA-like_rpt2 238 352 - -
Tan02g1771 372 SMART Cyclin_C_2 238 361 IPR004367 -
Tan02g1771 372 PANTHER CYCLINS 82 348 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan02g1771 372 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Tan02g1771 372 Pfam Cyclin, C-terminal domain 238 360 IPR004367 -
Tan02g1771 372 ProSitePatterns Cyclins signature. 140 171 IPR048258 -
Tan02g1771 372 Gene3D - 123 236 - -
Tan02g1771 372 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Tan02g1771 372 SUPERFAMILY Cyclin-like 238 363 IPR036915 -
Tan02g1771 372 SMART cyclin_7 242 330 IPR013763 -
Tan02g1771 372 SMART cyclin_7 145 229 IPR013763 -
Tan02g1771 372 FunFam Mitotic cyclin 6 123 223 - -
Tan02g1771 372 PIRSF Cyclin_A_B_D_E 2 366 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0995 Tan-Chr2:13927453 Tan02g1771 Tan-Chr2:82199619 1.00E-81 dispersed
Tan02g1771 Tan-Chr2:82199619 Tan11g1250 Tan-Chr11:10640351 3.20E-78 dispersed
Tan02g1771 Tan-Chr2:82199619 Tan02g1772 Tan-Chr2:82199619 7.70E-197 tandem
Tan01g4722 Tan-Chr1:113082550 Tan02g1771 Tan-Chr2:82199619 3.30E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1771 K06627 - csv:101206145 671.003