Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1772 ATGGCTGAGACAGACAACTGTGTCCGTGTCACTCGTGCTTCTAAGAAGAGAGCTGCAGCGGTCGCCATGGCCGAGGATCAGCCCGCTAATAAGAAGCGGGTCGTTCTCGGTGAGCTTTCGAACATTCAGAATGTGTCTGGGTCACTGCCACAGAAGAGGAGGGCCAAGTCCCAGATTACCAAATGCAAACCTAAGAAGAGAAGTAGGATTGGTGTTGCTCCAACGATCAAGACGACTGTTGTTATTGAAGATAATGAACCCAAGTTGAGCGTTGATGATCTTTTGGACGACCCAGAGATGAAGGGGCCTTATTCCTCGGATATTTATGCTTATCTTCGCAAGATGGAGGCGGAACCCAAAAGAAGGCCAATTCCAAATTACATTGAGAAGATTCAGACGGATGTAAGTGCCAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCCGAGGAATACAAACTCGGCTCTGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGACTTCAATTGTTGGGCGTTTCTTCAATGCTGATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGCTACATCACAGATAATACTTATAGAAGGGATGAGGTTGTGAAGATGGAGGCCGATATACTCAAGTCTTTGAACTTTGAAATGGGGAATCCTACTGTCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAACACCAAGTCTGCAGTTGGAATTCTTGGGTTACTACCTTGCTGAGCTTAGCCTACTGGACTATAATTTTGTGAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTGTTTCTTGCAAAATTCATCATCCGGCCGAAGCTGCATCCTTGGGGTTCAAACATGCAACAATACACAGGCTACAAGCCAGCCGATCTGAGGCCATGTGTCCTTCTGTTACATGATTTGTATATGGCCAGAAGAGGGGGCTCTCTGATAGCTGTGAGAGAGAAATACAAGTTGCATAGGGTAAGAAGCTTTATCCTCTGCAGTTTCATAGAACATTGTGTGGTTTTAAGTTTAAGGTGCTGA 1116 44.44 MAETDNCVRVTRASKKRAAAVAMAEDQPANKKRVVLGELSNIQNVSGSLPQKRRAKSQITKCKPKKRSRIGVAPTIKTTVVIEDNEPKLSVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTVKTFLRRFTNIAQEDFKTPSLQLEFLGYYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIRPKLHPWGSNMQQYTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRVRSFILCSFIEHCVVLSLRC 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82199619 82201937 + Tan0005706.2 Tan02g1772 744398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1772 371 FunFam Cyclin A1 225 355 - -
Tan02g1772 371 PIRSF Cyclin_A_B_D_E 3 359 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan02g1772 371 Gene3D - 123 236 - -
Tan02g1772 371 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Tan02g1772 371 Gene3D - 107 352 - -
Tan02g1772 371 SMART Cyclin_C_2 238 359 IPR004367 -
Tan02g1772 371 ProSitePatterns Cyclins signature. 140 171 IPR048258 -
Tan02g1772 371 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Tan02g1772 371 SUPERFAMILY Cyclin-like 238 351 IPR036915 -
Tan02g1772 371 CDD CYCLIN_AtCycA-like_rpt2 238 351 - -
Tan02g1772 371 SMART cyclin_7 242 330 IPR013763 -
Tan02g1772 371 SMART cyclin_7 145 229 IPR013763 -
Tan02g1772 371 PANTHER CYCLINS 82 348 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan02g1772 371 FunFam Mitotic cyclin 6 123 223 - -
Tan02g1772 371 Pfam Cyclin, C-terminal domain 238 353 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4722 Tan-Chr1:113082550 Tan02g1772 Tan-Chr2:82199619 9.60E-124 dispersed
Tan02g1772 Tan-Chr2:82199619 Tan11g1250 Tan-Chr11:10640351 1.10E-73 dispersed
Tan02g1771 Tan-Chr2:82199619 Tan02g1772 Tan-Chr2:82199619 7.70E-197 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1772 K06627 - csv:101206145 626.706