Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1790 ATGGGATTAAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTAACCAACAACAACAACATCAACAACCTACCTCCGATTCAACCACCACTACTACTACTACTACAACGCTCACTACTTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCTAGAAAACTCGGATCCTCTCACCCTAACAAAGATTCTTCTTCCCCCACCCAGGCAATCGAGACGCACCCAGGTGGCACGCGGTGGAATCCGACACAAGAACAGATAGGGATATTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACAAATCACTGCACAGCTCGGCATGTACGGTAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTACTCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCACCGCCATCCCCTTCGATGCTTCGGGAGCTGGGGAAGATAGTCCGTATAAGAGGAAGTGCATGAACTGGGGGTTTGAGTGTTTGGTAGATCAGGATAGCGGTATATTATGTAAAAAGGAGGAAGAAGATGATAGGACTCTGGAGTTGTTCCCCTTGCATCCAGAAGGCAGATGA 708 49.44 MGLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQHQQPTSDSTTTTTTTTTLTTFDLKTFIRPDCGPRKLGSSHPNKDSSSPTQAIETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEQITAQLGMYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHSPRTPPPPILTAIPFDASGAGEDSPYKRKCMNWGFECLVDQDSGILCKKEEEDDRTLELFPLHPEGR 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83246506 83249022 + Tan0010874.1 Tan02g1790 744416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1790 235 Gene3D - 97 164 - -
Tan02g1790 235 MobiDBLite consensus disorder prediction 67 104 - -
Tan02g1790 235 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
Tan02g1790 235 MobiDBLite consensus disorder prediction 156 177 - -
Tan02g1790 235 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 235 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Tan02g1790 235 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 MobiDBLite consensus disorder prediction 78 104 - -
Tan02g1790 235 FunFam WUSCHEL-related homeobox 4 97 164 - -
Tan02g1790 235 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2466 Tan-Chr1:31694617 Tan02g1790 Tan-Chr2:83246506 9.60E-25 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 7.60E-25 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan02g1791 Tan-Chr2:83246506 5.40E-95 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26779 PF00046 Homeodomain 2.90E-19 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1790 - - - 0.0