Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1790 ATGGGATTAAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTAACCAACAACAACAACATCAACAACCTACCTCCGATTCAACCACCACTACTACTACTACTACAACGCTCACTACTTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCTAGAAAACTCGGATCCTCTCACCCTAACAAAGATTCTTCTTCCCCCACCCAGGCAATCGAGACGCACCCAGGTGGCACGCGGTGGAATCCGACACAAGAACAGATAGGGATATTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACAAATCACTGCACAGCTCGGCATGTACGGTAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTACTCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCACCGCCATCCCCTTCGATGCTTCGGGAGCTGGGGAAGATAGTCCGTATAAGAGGAAGTGCATGAACTGGGGGTTTGAGTGTTTGGTAGATCAGGATAGCGGTATATTATGTAAAAAGGAGGAAGAAGATGATAGGACTCTGGAGTTGTTCCCCTTGCATCCAGAAGGCAGATGA 708 49.44 MGLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQHQQPTSDSTTTTTTTTTLTTFDLKTFIRPDCGPRKLGSSHPNKDSSSPTQAIETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEQITAQLGMYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHSPRTPPPPILTAIPFDASGAGEDSPYKRKCMNWGFECLVDQDSGILCKKEEEDDRTLELFPLHPEGR 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83246506 83249022 + Tan0010874.1 Tan02g1790 744416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1790 235 Gene3D - 97 164 - -
Tan02g1790 235 MobiDBLite consensus disorder prediction 67 104 - -
Tan02g1790 235 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
Tan02g1790 235 MobiDBLite consensus disorder prediction 156 177 - -
Tan02g1790 235 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 235 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Tan02g1790 235 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 MobiDBLite consensus disorder prediction 78 104 - -
Tan02g1790 235 FunFam WUSCHEL-related homeobox 4 97 164 - -
Tan02g1790 235 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
Tan02g1790 235 MobiDBLite consensus disorder prediction 34 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2466 Tan-Chr1:31694617 Tan02g1790 Tan-Chr2:83246506 9.60E-25 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 7.60E-25 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan02g1791 Tan-Chr2:83246506 5.40E-95 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26779 PF00046 Homeodomain 2.90E-19 CL0123 Tan TF