Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1791 ATGGGATTAAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTAACCAACAACAACAACATCAACAACCTACCTCCGATTCAACCACCACTACTACTACTACTACAACGCTCACTACTTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCTAGAAAACTCGGATCCTCTCACCCTAACAAAGATTCTTCTTCCCCCACCCAGGCAATCGAGACGCACCCAGGTGGCACGCGGTGGAATCCGACACAAGAACAGATAGGGATATTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACAAATCACTGCACAGCTCGGCATGTACGGTAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTACTCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCACCGCCATCCCCTTCGATGCTTCGGTACGGCCCTAG 570 50.7 MGLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQHQQPTSDSTTTTTTTTTLTTFDLKTFIRPDCGPRKLGSSHPNKDSSSPTQAIETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEQITAQLGMYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHSPRTPPPPILTAIPFDASVRP 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83246506 83249022 + Tan0010874.2 Tan02g1791 744417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1791 189 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 178 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Tan02g1791 189 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 Gene3D - 97 164 - -
Tan02g1791 189 MobiDBLite consensus disorder prediction 67 103 - -
Tan02g1791 189 FunFam WUSCHEL-related homeobox 4 97 164 - -
Tan02g1791 189 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 156 189 - -
Tan02g1791 189 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 78 103 - -
Tan02g1791 189 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 34 53 - -
Tan02g1791 189 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1791 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 1.00E-24 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan02g1791 Tan-Chr2:83246506 5.40E-95 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26780 PF00046 Homeodomain 1.90E-19 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1791 - - - 0.0