Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1791 ATGGGATTAAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTAACCAACAACAACAACATCAACAACCTACCTCCGATTCAACCACCACTACTACTACTACTACAACGCTCACTACTTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCTAGAAAACTCGGATCCTCTCACCCTAACAAAGATTCTTCTTCCCCCACCCAGGCAATCGAGACGCACCCAGGTGGCACGCGGTGGAATCCGACACAAGAACAGATAGGGATATTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAACAAATCACTGCACAGCTCGGCATGTACGGTAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTACTCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCACCGCCATCCCCTTCGATGCTTCGGTACGGCCCTAG 570 50.7 MGLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQHQQPTSDSTTTTTTTTTLTTFDLKTFIRPDCGPRKLGSSHPNKDSSSPTQAIETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEQITAQLGMYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHSPRTPPPPILTAIPFDASVRP 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83246506 83249022 + Tan0010874.2 Tan02g1791 744417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1791 189 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 178 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Tan02g1791 189 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 Gene3D - 97 164 - -
Tan02g1791 189 MobiDBLite consensus disorder prediction 67 103 - -
Tan02g1791 189 FunFam WUSCHEL-related homeobox 4 97 164 - -
Tan02g1791 189 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 156 189 - -
Tan02g1791 189 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 78 103 - -
Tan02g1791 189 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
Tan02g1791 189 MobiDBLite consensus disorder prediction 34 53 - -
Tan02g1791 189 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1791 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1791 Tan-Chr2:83246506 Tan05g2195 Tan-Chr5:72919538 1.00E-24 dispersed
Tan02g1790 Tan-Chr2:83246506 Tan02g1791 Tan-Chr2:83246506 5.40E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26780 PF00046 Homeodomain 1.90E-19 CL0123 Tan TF