Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1796 ATGCAAGGGCAAAGGAGCAGTGTTGGTTCCTTGTCAGAAACCATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGCAACCAACCAGTCTACTGGAATAACATGTGGAATCCTGCAGAAAACCGAATACCAGATTATTTGTTACCTACTTCTGATATAAATACTGGATATGTAAGCTCTGTGAGCCATGAGCAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGCGATATGCAAACTGAGGCACTACCTGATGAGCAGAAAGCGGAGCTTGGATGGTCTTCAGTGACTCGTGATGCAGATGGTCCAGTTACAGAAAACCGACTCTGTGAACCATCAAATAATCCTTCAATAGGCCATGTGAATTTAAGCCCACTGATTATACAAAATTCCAATTCTAATGCTCTTCCTCATAGTCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAATAGCAGAGTTAATGAAGGTTCTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGCGGATTTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTCCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGTAGAGCAGGCTCTTCCTTGGATGGTCGTCGAGCACCCTGTAAAAGAAAAGCTATTGAAGGAAGTGTTGCACAGTCCTCTTTAAGTGGAAGCAGTAGCTACTCTCAGCATATTGAAAGTGGTGCTGAACCCCCTCTTCCAGTTTTTCCTGGTTGCTACAACGCAGGCAGTAGGTTAACCATACCTGCTCCACCAGCACGCATGAGTCAAGCCCCAGTACGAGGTGCTGGCGAACTGACGTCCAACAGCTTCTCTGAGTCGATTGTTGCGGAAAGCTCAGATAGTTCTCAAAGAAACTATCGAATAAGGATTAGTTCATCAAATGCACAAAATTCTTTTGCTCCGGCAGGAACTACTGTCAGGCATCCTGGGGCCTCATCTTCCCAGCTGCCAGCTAGAATTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATATATCTCCTCAAGGTCAGCCAATAATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATTTAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCGGTTCATCAAGCTCTGCAGGAGAGAGACAGGTGGTGCAACGTGAGGAGGTGAGACCAAGCAACATGGGAAGAAACGTATCTGAACATCCCATGTTTGTCCCAGCAAATGAGCTGAGGAATTTGGTTCGAAATCCATCGAGTGGTAGAGGTTTAACATCTTCAAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCATCCCTCTCCTGGACCTTGGATCCCGCCTGAGAATAGTCCAACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCTACAAATGAATCTGGAGGTAGGGCAAGTAATTATTCACAACGATCAGGTTCTAATTCTGCTCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGGCACCATTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGACAGTGGACTTGGTCTTCCCTATTCATTTCGAACCTTGGCTACTTCTAGTGAAGGAAGTGACAATAATAGACTAGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTCCGCAGGGGTGAAAGTTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATTTATGATCGGCACAGGGATATGCGTCTTGACGTTGATAACATGTCGTATGAGGTCTGGCTGATACAAACCAACTGA 1884 45.28 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDINTGYVSSVSHEQRSLSRWSLGEPSSCDMQTEALPDEQKAELGWSSVTRDADGPVTENRLCEPSNNPSIGHVNLSPLIIQNSNSNALPHSLNLNASFASHGGDNSRVNEGSNVYKSSGSEEGRILCSSASDPLLLPPGNSGLPVVANDGRAGSSLDGRRAPCKRKAIEGSVAQSSLSGSSSYSQHIESGAEPPLPVFPGCYNAGSRLTIPAPPARMSQAPVRGAGELTSNSFSESIVAESSDSSQRNYRIRISSSNAQNSFAPAGTTVRHPGASSSQLPARILPAEHVLDLRPAPAVDNISPQGQPIMIHVPALPRSLQPFRWNGSSTSRSGGSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSSGRGLTSSNLSIPGNVASTSRVGSSSGVHPSPGPWIPPENSPTQFPRRLTEYVRRQLFSSATNESGGRASNYSQRSGSNSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDSGLGLPYSFRTLATSSEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEVWLIQTN 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83299809 83306310 + Tan0009559.5 Tan02g1796 744422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1796 627 MobiDBLite consensus disorder prediction 490 525 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 193 242 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 223 240 - -
Tan02g1796 627 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 211 620 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Tan02g1796 627 MobiDBLite consensus disorder prediction 373 395 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 373 475 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 490 518 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 425 458 - -
Tan02g1796 627 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1796 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1794 Tan-Chr2:83299809 Tan02g1796 Tan-Chr2:83299809 0.00E+00 dispersed
Tan02g1796 Tan-Chr2:83299809 Tan02g2622 Tan-Chr2:94750318 3.90E-07 dispersed
Tan02g1795 Tan-Chr2:83299809 Tan02g1796 Tan-Chr2:83299809 0.00E+00 tandem
Tan02g1796 Tan-Chr2:83299809 Tan02g1797 Tan-Chr2:83299809 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55