Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1808 ATGGATATTGACCATGAAAAGTCTGGGGATCAGATGGATATTCTGACTATGATTCAGCAGATGGGAAAATTTCCTGAGTTTTTTGAATTTACTGAATTGCCATCCTCTGCTTTTGCTTTTGGTAGTTCCAATATTGGTGCCACTTCAAATCTCTTGCAAAACCCAAATCCCACTTTTCATTCTTCTAATCTCCCATCCACCGTTTCTTTTAATAACGCCGCTGACCCTGTTGGACCGCCGTGCTTTCTGCCGTATTCCGCCGCTGGCCGCTGGAGAACCCATGTTGCCGCCACCAGAAATGCCGACACGAAGCAGAATTCAATGGCGGCGATGAGGGAGATGATCTACCGTATAGCGGCGATGCAGCCGATCCACATAGACCCAGAATCAGTAAAACCACCGAAACGGCGGAACGTGAAGATCTCAAAAGACCCACAAAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATCCTTCAAAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTCAAGTTCTTGAAAAACCAAGTCCAATCCCTTGAAATTGCCGCCGCCAATCGCTCCACCGGCGTCGGCCTTCCGCCCGGCGGGAGTCATTATAAACAGTTCCAAATTATTGCTCAAAGTGGACATGAGCACGTGAATGAATGA 702 48.29 MDIDHEKSGDQMDILTMIQQMGKFPEFFEFTELPSSAFAFGSSNIGATSNLLQNPNPTFHSSNLPSTVSFNNAADPVGPPCFLPYSAAGRWRTHVAATRNADTKQNSMAAMREMIYRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEIAAANRSTGVGLPPGGSHYKQFQIIAQSGHEHVNE 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 83613506 83615218 + Tan0021863.1 Tan02g1808 744434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1808 233 Gene3D - 140 206 IPR036638 GO:0046983(InterPro)
Tan02g1808 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 199 IPR036638 GO:0046983(InterPro)
Tan02g1808 233 Pfam Helix-loop-helix DNA-binding domain 150 191 IPR011598 GO:0046983(InterPro)
Tan02g1808 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 62 206 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g1808 233 FunFam BHLH transcription factor 144 207 - -
Tan02g1808 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983(InterPro)
Tan02g1808 233 SMART finulus 147 196 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1808 Tan-Chr2:83613506 Tan05g1685 Tan-Chr5:49618688 4.10E-39 dispersed
Tan01g4766 Tan-Chr1:113495252 Tan02g1808 Tan-Chr2:83613506 7.60E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26783 PF00010 HLH 1.70E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1808 - - - 0.0