Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1837 ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACCCTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGATTCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACAGATTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGGCGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTCAAGTCCTTGA 780 50.0 MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 84416418 84417732 + Tan0003940.1 Tan02g1837 744463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1837 259 FunFam Chlorophyll a-b binding protein, chloroplastic 52 258 - -
Tan02g1837 259 SUPERFAMILY Chlorophyll a-b binding protein 48 256 - -
Tan02g1837 259 Gene3D Chlorophyll a/b binding protein domain 61 247 - -
Tan02g1837 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 36 250 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Tan02g1837 259 Pfam Chlorophyll A-B binding protein 60 227 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1837 Tan-Chr2:84416418 Tan09g2110 Tan-Chr9:71467726 3.90E-54 dispersed
Tan02g1837 Tan-Chr2:84416418 Tan05g2431 Tan-Chr5:75463232 3.00E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1837 K08911 - csv:101219846 411.764