Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1875 ATGGGAGTCGCGAATCTCTCATACGAGGAATGTCGTCGCAAGAGAGTAGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCGCCTTCCAAATCCTCCCCTAGTAAACAGGCCAAGCCTCTTGTGGCGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAACAACCAGCGCCTGTTTACGCTGAAGTTGTTGTCAATCGCGTGGCGATTCCTAGAAGGTTCTCCAGAGCAAGAGATTTTCCAGAGCAGTTTTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGCGCTGAGCAATTACAATCTGGATTGGACCCAAATTATCCCAACTGTATAAAGTCAATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAAAAATGATGGAGTAATGACTTTAATAGATGAAGATGGCGATGAGTATCCAACAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGGTTTTCAATTGCTCATAAATTGGCAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTTCAACCTGCAAGGTGTACATTTTTCGGGCGAATGGTTCCAAAGAAGATAGTGATTCCAATAGTAGCTAA 690 44.49 MGVANLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQAKPLVAQKQLVVVRRSSRVAKQPAPVYAEVVVNRVAIPRRFSRARDFPEQFYASDEARKNAFESAEQLQSGLDPNYPNCIKSMVRSHVSGCFWLGLPSHFCKTHLPKNDGVMTLIDEDGDEYPTIYLARKTGFSGGWKGFSIAHKLADGDAVVFQLIKPSTCKVYIFRANGSKEDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 86676725 86678616 - Tan0004552.1 Tan02g1875 744501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1875 229 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677(InterPro)
Tan02g1875 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Tan02g1875 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Tan02g1875 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Tan02g1875 229 Gene3D - 101 219 IPR015300 -
Tan02g1875 229 SUPERFAMILY DNA-binding pseudobarrel domain 120 219 IPR015300 -
Tan02g1875 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0900 Tan-Chr2:10265319 Tan02g1875 Tan-Chr2:86676725 3.90E-55 dispersed
Tan02g1875 Tan-Chr2:86676725 Tan07g1114 Tan-Chr7:36963388 2.20E-29 dispersed
Tan02g1874 Tan-Chr2:86648614 Tan02g1875 Tan-Chr2:86676725 2.00E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26786 PF02362 B3 1.90E-13 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1875 - - - 0.0