Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1894 ATGCCATCGAACGGCCCCGATTCGCAGCAGCAGGCGGCGCATCAGACGGAGCAGAATCAGCAACCGCACAAACAGCCACAGCCGCCACCGCAGCGGTGGATGGCGATGCAGTATCCAGCGGCGGCGATGATAATGCAGCATCCGATGATGCCGCCACAGCATTACGTGCCTCCGCCTTCGCCGCACTATATTCCTTACCGTCAATACCCGCCGCCGCATCAGGTTAACGGCCAGCAGCCTCACCAGGGTTCCTCCAGCGAGAACAAGACTATTTGGGTCGGCGATTTGCAGCATTGGATGGACGAGAATTACCTCCATAGCTGCTTCGCTTCCACCGGCGAGATTTCTTCCATTAAAGTCATTCGTAATAAGCAAACTGGTATATCAGAAGGCTATGGATTTGTAGAATTTTTCTCTCACACAACTGCAGAGAAAGTTCTGCAGAACTATTCTACAATTTTGATGCCTAATACTGAGCAAACTTTCCGGCTAAACTGGGCAACATTTAGCACTGGTGACAAGCGTTCAGAAAATGGTTCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTACTGATAGTATACTGCATGAAACTTTTGCTAGTAAATATTCATCTGTCAAAGCAGCAAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAATGAAAGGTCTCAGGCCATGACTGAAATGAATGGCATATATTGCTCAAGCAGGCCCATGCGCATTGGTGCAGCAACACCCAAAAAGTCCTCTGGATATCAGCAGCAATATTCTTCTCAAGGATATGCATCAAATGGTTCATTCACCCATGGGCACCAGTCCGATGGAGATTCTACAAATACAACAATTTTCATTGGAGGGCTTGATCCCAATGTTACTGATGATGATCTGAAGCAGCTTTTCTCTCAGCATGGTGACATAGTATCCGTTAAGATACCAGTTGGAAAAGGTTGTGGTTTTATTCAATTTGCAAATAGAAAGAATGCTGAAGAGGCGTTGCAGAAATTAAATGGAACTGTGATTGGCAAACAAACAGTACGTCTTTCTTGGGGACGAAGTCCAGCGAATAAGCAGTATCGAGCTGATTATGGTAATCACTGGAGTGGAGCCTACTATGGAGGGCAGGTGTATGGCGGATATGGATACGCACTGCCGTTACCTTATGATCCACCGACGATGTATGCTGCAGCATCATATGGAGCTTACCCTATGTATGGCACCCATCAACAGCAAGTGAACTGA 1284 45.95 MPSNGPDSQQQAAHQTEQNQQPHKQPQPPPQRWMAMQYPAAAMIMQHPMMPPQHYVPPPSPHYIPYRQYPPPHQVNGQQPHQGSSSENKTIWVGDLQHWMDENYLHSCFASTGEISSIKVIRNKQTGISEGYGFVEFFSHTTAEKVLQNYSTILMPNTEQTFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSILHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAATPKKSSGYQQQYSSQGYASNGSFTHGHQSDGDSTNTTIFIGGLDPNVTDDDLKQLFSQHGDIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPANKQYRADYGNHWSGAYYGGQVYGGYGYALPLPYDPPTMYAAASYGAYPMYGTHQQQVN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 87135605 87140970 + Tan0008883.1 Tan02g1894 744520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1894 427 SMART rrm1_1 296 363 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 SMART rrm1_1 183 257 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 SMART rrm1_1 90 165 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 CDD RRM1_SECp43_like 90 170 - -
Tan02g1894 427 MobiDBLite consensus disorder prediction 72 87 - -
Tan02g1894 427 FunFam Polyadenylate-binding protein RBP47 277 397 - -
Tan02g1894 427 Gene3D - 287 397 IPR012677 -
Tan02g1894 427 Gene3D - 168 286 IPR012677 -
Tan02g1894 427 CDD RRM2_SECp43_like 181 260 - -
Tan02g1894 427 SUPERFAMILY RNA-binding domain, RBD 50 171 IPR035979 GO:0003676(InterPro)
Tan02g1894 427 MobiDBLite consensus disorder prediction 61 87 - -
Tan02g1894 427 FunFam Polyadenylate-binding protein RBP47B 170 272 - -
Tan02g1894 427 Pfam RNA recognition motif 91 158 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 Pfam RNA recognition motif 184 254 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 Pfam RNA recognition motif 297 360 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 MobiDBLite consensus disorder prediction 1 22 - -
Tan02g1894 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 73 371 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Tan02g1894 427 MobiDBLite consensus disorder prediction 1 32 - -
Tan02g1894 427 Gene3D - 88 167 IPR012677 -
Tan02g1894 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723(InterPro)
Tan02g1894 427 SUPERFAMILY RNA-binding domain, RBD 166 285 IPR035979 GO:0003676(InterPro)
Tan02g1894 427 SUPERFAMILY RNA-binding domain, RBD 287 395 IPR035979 GO:0003676(InterPro)
Tan02g1894 427 FunFam Polyadenylate-binding protein RBP47B 88 168 - -
Tan02g1894 427 CDD RRM3_NGR1_NAM8_like 294 365 - -
Tan02g1894 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1894 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4822 Tan-Chr1:114035013 Tan02g1894 Tan-Chr2:87135605 1.10E-166 dispersed
Tan01g4823 Tan-Chr1:114035013 Tan02g1894 Tan-Chr2:87135605 1.00E-140 dispersed
Tan02g1894 Tan-Chr2:87135605 Tan05g3098 Tan-Chr5:83128774 2.40E-109 dispersed
Tan02g1894 Tan-Chr2:87135605 Tan02g1895 Tan-Chr2:87135605 2.80E-182 tandem
Tan05g1407 Tan-Chr5:20280571 Tan02g1894 Tan-Chr2:87135605 3.00E-131 transposed
Tan08g0200 Tan-Chr8:1805353 Tan02g1894 Tan-Chr2:87135605 2.30E-06 transposed
Tan01g4821 Tan-Chr1:114035013 Tan02g1894 Tan-Chr2:87135605 5.80E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117