Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1912 ATGTTTAGCTCCTCCCGTATGTTGCCGGACCTCTCCTTGCAGATAAGTCCGCCGTCTGATTCCGGCAGCAGCGGCAGCGATCTCACCCATGACAATGCTGCTCCTGCTACTGCTACTGCTGCTGGGTTTTTTCTTCCGGCTAAACCCCATATGGCCGGTTTAGCCATCGAGCTTGAAAAAAGCTTCAACAATAATGGCCGCCATTTTAACGAACACCAACCTCAAATCTATGGCCGCCATTTTAAGAGAGGTGCAAAAATGGGGTTTGGAATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTCCACGCTGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACTCCAAAATCTGTATTGGAGCTGATGAATGTCAAAGATCTAACCCTAGCTCATGTAAAGAGCCATTTGCAGATGTATAGAACTGTGAAAAGCACTGACAAATCAACTGACTCAGCCTTGAAGAACCAATTAAGGCCAGAAGTTGATGCCAATGGTGTTTCAAATTGTGAGATCTCTAACCCAAAACTTGCAATATGGAAAAGTCCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACCAGATGGAGTCAACATTGCAACAATAATATTGGAAAAAATCAGCAGGAGCTGGACCGACATCATGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATGGCGATGTGTATAATAATAATAATAATAATAATCTTAATTTAGATTTCACTCTCGGATGCCCTAATTCACTAACAATCGAGTCTAATTCTCACTCTTCAGCTTCAGAACTTCCCCTTCTGAAATGCTAA 897 43.14 MFSSSRMLPDLSLQISPPSDSGSSGSDLTHDNAAPATATAAGFFLPAKPHMAGLAIELEKSFNNNGRHFNEHQPQIYGRHFKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDSALKNQLRPEVDANGVSNCEISNPKLAIWKSPDQMNLFCSSMETNQEMTTRWSQHCNNNIGKNQQELDRHHASIKISSGVKKQRLEGSCLSLCDHHGDVYNNNNNNNLNLDFTLGCPNSLTIESNSHSSASELPLLKC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 87549699 87552097 + Tan0003769.1 Tan02g1912 744538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1912 298 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 278 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Tan02g1912 298 FunFam Myb family transcription factor 96 154 - -
Tan02g1912 298 MobiDBLite consensus disorder prediction 1 32 - -
Tan02g1912 298 Gene3D - 97 154 - -
Tan02g1912 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 151 IPR006447 GO:0003677(InterPro)
Tan02g1912 298 SUPERFAMILY Homeodomain-like 95 152 IPR009057 -
Tan02g1912 298 Pfam Myb-like DNA-binding domain 99 150 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1912 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1912 Tan-Chr2:87549699 Tan07g2007 Tan-Chr7:71775286 6.90E-31 dispersed
Tan01g4854 Tan-Chr1:114254903 Tan02g1912 Tan-Chr2:87549699 1.80E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26791 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Tan TF