Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1913 ATGAAAACAAAAGGGATTTTCATCAATACCACCAATTTTACGGGTATGAAATTTAACAATTTGTTAACCGACGACGACGGCGATTTTCCGACGCCGAGCAGTTCCGATTCCGCCAATAGCCGCCCGAGCAGCGATGGGTCGCCGGTGAGCTTGTCGCCGTGGAATCAGAGTTATCCCTTCATGAAATCTCCCTGTTTTTCCCAATACAGAAACGGCGTCGTACACCCGAAAATTAATAATGATAATTCTCTAATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTGGCCACCGCCGGCGAGCTGCTCTACACCGGCTCCGACAGCAAAAACATCCGGGTCTGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCCAGCAGTGGATTGGTTAAGGCAATTATAATTGCCGGCGAAAAGATCTTCACCGGTCACCAGGACGGTAAAATTCGGGTATGGAACGTGTCACCGACGAACCCAAGCGGCGGTCACCGGCGGGTTGGGACTTTGCCGGCGATGAGAGATATATTAAGAAGCTCGATTAACCCTCAAAACTACGTCGTTGTGGGACGGAACCGGAGCCGGCTTTGGTTTAAGCATGTCGATGCGGTTTCGTGCTTGAGCTTGAGTGAAGATGGTACGATTTTGTACTCTTCTTCTTGGGATAGAACCTTGAAAGTTTGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTGTTGTCCACGACGACGCTGTAAATGCTGTCGTCGCTGCTTCGGATGGCTTGGTTATCACTGGCTCGGCTGATGGCACGGCCAAGGTATGGCGGAGGCAGCATGAAGAACGGAAAGACGCAACAAAACACATACTGGAGCAAACGCTGCTGAAGCAAGAGAGTGCAGTGACGGCGGTGGCCGTCAACACCGCCGGTACGGTGGTGTACTGCGGATCCTCCGACGGGCTGGTCAACTTCTGGGAGCGAGAAAAGCGGTTGACTTACGGCGGAGTTCTCAAGGGCCACAAACTAGCAGTTCTCTGCCTCGCGGCTGCCGGAAACCGAGTGATACTCAGCGGCGCCGCCGATAAAACCATATGCGTGTGGCGGAGGGACGGGCTTTTCCACACGTGCGTAACGGTGCTGACGGGTCACACCGGACCCGTTAAATGCTTGGCTGTCGAGGAAGATCGCCGCCCGTCTAAGCACGGCGGTCGCCGGTGGATTGCGTACAGCGGCAGTCTAGACAGATCGGTGAAGGTGTGGGGGGTTCCCGACGGCGTCTGA 1269 53.43 MKTKGIFINTTNFTGMKFNNLLTDDDGDFPTPSSSDSANSRPSSDGSPVSLSPWNQSYPFMKSPCFSQYRNGVVHPKINNDNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIIAGEKIFTGHQDGKIRVWNVSPTNPSGGHRRVGTLPAMRDILRSSINPQNYVVVGRNRSRLWFKHVDAVSCLSLSEDGTILYSSSWDRTLKVWRISDSKCLESLVVHDDAVNAVVAASDGLVITGSADGTAKVWRRQHEERKDATKHILEQTLLKQESAVTAVAVNTAGTVVYCGSSDGLVNFWEREKRLTYGGVLKGHKLAVLCLAAAGNRVILSGAADKTICVWRRDGLFHTCVTVLTGHTGPVKCLAVEEDRRPSKHGGRRWIAYSGSLDRSVKVWGVPDGV 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 87571960 87574745 - Tan0011998.1 Tan02g1913 744539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1913 422 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 35 418 IPR045182 -
Tan02g1913 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 322 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 236 - -
Tan02g1913 422 Gene3D - 75 169 IPR015943 GO:0005515(InterPro)
Tan02g1913 422 Gene3D - 192 282 IPR015943 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 326 364 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 234 272 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 283 322 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 193 231 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 81 118 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 369 417 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 SMART WD40_4 119 156 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 363 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 202 230 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 92 117 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 292 321 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 236 271 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 331 363 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 Pfam WD domain, G-beta repeat 371 416 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Tan02g1913 422 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Tan02g1913 422 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Tan02g1913 422 SUPERFAMILY WD40 repeat-like 85 421 IPR036322 GO:0005515(InterPro)
Tan02g1913 422 CDD WD40 92 416 - -
Tan02g1913 422 MobiDBLite consensus disorder prediction 26 50 - -
Tan02g1913 422 Gene3D - 283 421 IPR015943 GO:0005515(InterPro)
Tan02g1913 422 MobiDBLite consensus disorder prediction 24 50 - -
Tan02g1913 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 271 IPR001680 GO:0005515(InterPro)
Tan02g1913 422 FunFam BnaA09g28200D protein 189 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1913 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1913 Tan-Chr2:87571960 Tan07g1055 Tan-Chr7:29644172 7.30E-111 dispersed
Tan04g0134 Tan-Chr4:875071 Tan02g1913 Tan-Chr2:87571960 8.60E-30 transposed
Tan05g2042 Tan-Chr5:70683230 Tan02g1913 Tan-Chr2:87571960 1.00E-42 transposed
Tan01g4876 Tan-Chr1:114742923 Tan02g1913 Tan-Chr2:87571960 8.90E-110 wgd
Tan02g0857 Tan-Chr2:9505892 Tan02g1913 Tan-Chr2:87571960 1.10E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27