Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1923 ATGGAGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCGTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGTTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAGGCTGTCATAGAAGAACAGAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGCATTCCTGGAATTAACATTCCTAACCGTCCTGCGGGACAAAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCCACGAGGTTTGGTAATTTCACGTTGTCTGCGGCGTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGTAGATCCAAGCATGTATGGTGCGGGTGCTAACTTTCCATATGGATTTCCTAACATGTTTCATGGTAGTCATGGCCACGCTCATGGATACTATCACCATCTCCGACAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCTTAATCTGGCAATAG 693 45.74 MESGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAVIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYVDPSMYGAGANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 87800081 87802612 - Tan0014707.1 Tan02g1923 744549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1923 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Tan02g1923 230 CDD RING-HC_AtRMA-like 28 72 - -
Tan02g1923 230 MobiDBLite consensus disorder prediction 1 20 - -
Tan02g1923 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Tan02g1923 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Tan02g1923 230 MobiDBLite consensus disorder prediction 84 122 - -
Tan02g1923 230 SMART ring_2 30 70 IPR001841 -
Tan02g1923 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Tan02g1923 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 220 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Tan02g1923 230 SUPERFAMILY RING/U-box 26 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1923 Tan-Chr2:87800081 Tan05g0774 Tan-Chr5:5662579 7.50E-25 dispersed
Tan04g2472 Tan-Chr4:83504578 Tan02g1923 Tan-Chr2:87800081 4.40E-21 transposed
Tan08g1518 Tan-Chr8:62883541 Tan02g1923 Tan-Chr2:87800081 1.10E-26 transposed
Tan02g1923 Tan-Chr2:87800081 Tan03g1430 Tan-Chr3:70712022 1.50E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1923 K10666 - csv:101221027 422.165