Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1942 ATGGTATCGGCAGAGAGAAATTCACCAAGGGCGGCGGTTCCGACATCTTCCTCGGCGAGCGAGAACATCATGGACGGCGTGGCTCGGGCGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCGAAGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTGGCGACGAACCGATTCGTGTGCGAGATCTGCAAGAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGACACAACTTGCCTTGGAAACTCCGGCAGCGGACAAGCAATGAGATAAGGAAACGAGTGTACGTTTGTCCAGAAGCGTCTTGCGTCCATCACAATCCAGGTAGGGCACTGGGAGATCTGACGGGGATAAAAAAGCACTTCTCGAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAAGTAGAGAGTATAAATGCGATTGTGGAACCTTATTTTCAAGGAGGGATAGTTTCATCACGCATCGGGCTTTCTGCGATGCGTTGGCGTTCGCAAGCACGAATTCGAACTCGGCGGTTGGTTCTTCGCCGGCTTTGTCAATTCAAAGCTCAGAACCGCCGGACAATAACCCCATCGGACCTCCGCCATTAACACCGGCAGTGACAAGCTTAACCTCCACCACCGCCACCGCCACCGTCTCCAACACAACCAACAACCCAACAAACGGCAGTGGCATCAGTGGTGGTAGAAGCGTTTTCGCCGGTGTATTTGCCTCTACTCCCACGGTTACCAGCGCCCCAAATCCACCTCATCAAACCACCACCTCCGGCAGCCGATCAGATCGCGACGGCGCCAACAATCCACCAACCACCGCCATCGAGCCCACATCGCTCTCTCTCTCAACGTCCCTCTTCGTCTCCTGCAGAGCCTCAGCCTCAGGCTCCTCCATCTTTCAGGACCATCCACCACATTACGCCCCGCCGCCCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCAGCCCAAATGGGCGTCACCGCCTCCAACGCCGCATCTTTGCTGCGCGGCTCCAGGCTCTCAATATCGCCGTCTCCCGGTCATGCCACTTCCGCCGCCGCCATCACGGCTGGACTCGGACTTGGATTTGGAAGCGAGCCCATGACAAGAGATCTCCTTGGACTTGGCATGAGCGGTGGTGGAGCTGCCGGCGGCGGATTTTCTGCTCTTTTCACGTCCTTTGGTGGTGGCTGCGACGTTGAAGCTGCTGCACCTTACGGCGGCGGCGGGACTAGTGGTTAA 1323 57.52 MVSAERNSPRAAVPTSSSASENIMDGVARAKKKRNLPGMPDPKAEVIALSPKSLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPGRALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGSREYKCDCGTLFSRRDSFITHRAFCDALAFASTNSNSAVGSSPALSIQSSEPPDNNPIGPPPLTPAVTSLTSTTATATVSNTTNNPTNGSGISGGRSVFAGVFASTPTVTSAPNPPHQTTTSGSRSDRDGANNPPTTAIEPTSLSLSTSLFVSCRASASGSSIFQDHPPHYAPPPQPAAMSATALLQKAAQMGVTASNAASLLRGSRLSISPSPGHATSAAAITAGLGLGFGSEPMTRDLLGLGMSGGGAAGGGFSALFTSFGGGCDVEAAAPYGGGGTSG 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 88019556 88022723 - Tan0013342.1 Tan02g1942 744568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1942 440 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 97 131 - -
Tan02g1942 440 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Tan02g1942 440 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Tan02g1942 440 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Tan02g1942 440 MobiDBLite consensus disorder prediction 265 301 - -
Tan02g1942 440 Gene3D Classic Zinc Finger 56 83 - -
Tan02g1942 440 FunFam protein indeterminate-domain 12-like 39 107 - -
Tan02g1942 440 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 162 198 - -
Tan02g1942 440 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Tan02g1942 440 MobiDBLite consensus disorder prediction 9 23 - -
Tan02g1942 440 SMART c2h2final6 101 131 IPR013087 -
Tan02g1942 440 SMART c2h2final6 60 82 IPR013087 -
Tan02g1942 440 SMART c2h2final6 136 156 IPR013087 -
Tan02g1942 440 MobiDBLite consensus disorder prediction 198 212 - -
Tan02g1942 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 362 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan02g1942 440 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tan02g1942 440 MobiDBLite consensus disorder prediction 198 253 - -
Tan02g1942 440 MobiDBLite consensus disorder prediction 1 23 - -
Tan02g1942 440 Gene3D Classic Zinc Finger 94 184 - -
Tan02g1942 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Tan02g1942 440 MobiDBLite consensus disorder prediction 224 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0339 Tan-Chr2:2821697 Tan02g1942 Tan-Chr2:88019556 6.20E-08 dispersed
Tan02g1942 Tan-Chr2:88019556 Tan03g1964 Tan-Chr3:74745935 9.70E-98 dispersed
Tan01g4896 Tan-Chr1:114873037 Tan02g1942 Tan-Chr2:88019556 1.50E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26797 PF00096 zf-C2H2 0.0086 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1942 K25869 - csv:101217471 563.148