Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1974 ATGGATATGAGAGAGCAGGAGAAGGAAGTAATAATGCCTGGTGCTTCCGGCGGCGGTGTTTATGGTCATATTTTTGGGGAAACGTCGGCGGGAGTTGTGGAGAGGAGAATAGATGCGATTCATAATGGTTCTCATCATCATCTTCAAGCGGAGCATCTCGATGGCGAGCGTGTTGCGGGAGAGAATGTTGGCGGCGGCGGTGGAGGTAGATCCAAAGGGCGGGGGGCGGTTACGGGAGTTAGGTATCGTGAGTGTTTGAAGAATCACGCGGCGAGCGTGGGGGGGAATATTTACGACGGATGCGGGGAGTTTATGCCGAGTGGTGAAGACGGAACCCTAGAGGCTCTGAAATGCGCCGCTTGCGAATGTCACCGGAACTTCCACCGGAAAGAAATTGACGGCGAGAGTCAATTGAGTATCGGCGCTAATTACAGAAGAGGCGGCGTAATGTTACCGCATCTTCAACTTCCTCCGCCGTTACCGTCGCCCTCCGCTCTCCACGGCCACCATAAATTCTCCATGGCATTGAACCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCGATGAACGTCGCCTTCGCCGGCGGTGGAGGCGGCGGAACCGAATCTTCCAGCGAGGATTTGAACGTCTTCCAGTCCAATGCCGAGGTCATGCCGCCGTCTTCCTACTCCTTGTCGAAAAAGCGGTTCCGTACAAAGTTCACACAGGAGCAAAAGGATCGGATGCTCGAGTTCGCAGAGAAAGTCGGATGGAGGATTCAGAAGCAAGACGAAGAAGAAGTGGAAAGATTCTGTAGCGAAGTCGGAGTAAAACGGCAAGTTCTCAAAGTCTGGATGCACAACAACAAGAACACAATGAAGAAGCAGAACGACAATAATCACGAACCAGAATTGGCCGGCACCGTCGCCGGCGCCGGTGCCGTCGTGACGAGTGAATCGTAA 945 53.65 MDMREQEKEVIMPGASGGGVYGHIFGETSAGVVERRIDAIHNGSHHHLQAEHLDGERVAGENVGGGGGGRSKGRGAVTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGESQLSIGANYRRGGVMLPHLQLPPPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAFAGGGGGGTESSSEDLNVFQSNAEVMPPSSYSLSKKRFRTKFTQEQKDRMLEFAEKVGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTMKKQNDNNHEPELAGTVAGAGAVVTSES 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 88483873 88485022 + Tan0021401.1 Tan02g1974 744600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1974 314 FunFam Zinc-finger homeodomain protein 2 216 289 - -
Tan02g1974 314 MobiDBLite consensus disorder prediction 286 314 - -
Tan02g1974 314 ProSiteProfiles 'Homeobox' domain profile. 226 290 IPR001356 GO:0003677(InterPro)
Tan02g1974 314 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Tan02g1974 314 NCBIfam homeobox domain, ZF-HD class 228 285 IPR006455 -
Tan02g1974 314 Gene3D - 214 289 - -
Tan02g1974 314 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 131 IPR006456 -
Tan02g1974 314 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 286 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan02g1974 314 Pfam ZF-HD protein dimerisation region 80 132 IPR006456 -
Tan02g1974 314 SUPERFAMILY Homeodomain-like 220 290 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1974 Tan-Chr2:88483873 Tan03g1984 Tan-Chr3:74903103 3.20E-55 dispersed
Tan02g1974 Tan-Chr2:88483873 Tan02g2444 Tan-Chr2:93022400 1.00E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26800 PF04770 ZF-HD_dimer 5.30E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1974 - - - 0.0