Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g2001 | ATGGCGACGCCGGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGGAAGCATTATTATTCAATGTGGCAGACATTGTTTGAAATTGATATTAAATATGTACCCATCAAGCCTATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAATGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTCGAGAATCGTATCGATGCCCTTCGGACTTTGCGTGAATTAAAGCTTCTTAGGCATCTTCGCCACGAAAATGTGATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTTAAAGATGTTTATTTGGTTTATGAACTGATGGATACGGATCTACATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGATCACTGCCAATATTTTCTCTTTCAGTTGCTCAGAGGCTTAAAGTATCTGCACTCTGCAAACATTCTACATAGGGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGATCTCAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGAAAGAATCAATTTATGACAGAGTATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGTGAGAATTATGGGACATCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAACTTCTCGGTAGGAAACCTATCTTCCCCGGTACCGAATGTTTGAATCAACTCAAATTGATAATTAACCTACTGGGTAGCCAGAGAGAGGAGGATCTTGAGTTCATAGACAATCCAAAGGCAAGGAGGTACATAAAATCTCTCCCATACTCTCCTGGGGCTCCGCTTTCCCGTCTTTATCCGGGCGCTCATTCTCTTGCAATTGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAAGCATTGCAGCATCCTTACATGTCCCCACTGTACGATCCAAACAGTAATCCTCCAGCTCAGGTACCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCTGAAGGTCTGGAAGAACACGCAGAAATGGCACGCTTCCACCCTGAACCTACTACGAGTAGTACCGTGGTGTTTTCTTGA | 1161 | 42.98 | MATPVEPPNGVRSQGKHYYSMWQTLFEIDIKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPGAHSLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMARFHPEPTTSSTVVFS | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 89172052 | 89176150 | + | Tan0022679.1 | Tan02g2001 | 744627 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g2001 | 386 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 154 | 166 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan02g2001 | 386 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 26 | 357 | IPR050117 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Tan02g2001 | 386 | SMART | serkin_6 | 32 | 319 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan02g2001 | 386 | ProSitePatterns | Protein kinases ATP-binding region signature. | 38 | 61 | IPR017441 | GO:0005524(InterPro) | |
Tan02g2001 | 386 | CDD | STKc_TEY_MAPK | 26 | 361 | - | - | |
Tan02g2001 | 386 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 345 | - | - | |
Tan02g2001 | 386 | ProSiteProfiles | Protein kinase domain profile. | 32 | 319 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan02g2001 | 386 | FunFam | Mitogen-activated protein kinase | 18 | 126 | - | - | |
Tan02g2001 | 386 | Pfam | Protein kinase domain | 34 | 319 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan02g2001 | 386 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 355 | - | - | |
Tan02g2001 | 386 | ProSitePatterns | MAP kinase signature. | 67 | 170 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan02g2001 | 386 | FunFam | Mitogen-activated protein kinase | 116 | 345 | - | - | |
Tan02g2001 | 386 | SUPERFAMILY | Protein kinase-like (PK-like) | 31 | 326 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1255 | Tan-Chr1:12163295 | Tan02g2001 | Tan-Chr2:89172052 | 1.50E-163 | dispersed | |
Tan02g2001 | Tan-Chr2:89172052 | Tan06g1971 | Tan-Chr6:62495526 | 5.30E-116 | dispersed | |
Tan02g2001 | Tan-Chr2:89172052 | Tan07g1607 | Tan-Chr7:67447195 | 2.50E-113 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67238 | PF00069 | Pkinase | 1.70E-71 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g2001 | K20535 | - | csv:101213478 | 758.829 |