Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2001 ATGGCGACGCCGGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGGAAGCATTATTATTCAATGTGGCAGACATTGTTTGAAATTGATATTAAATATGTACCCATCAAGCCTATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAATGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTCGAGAATCGTATCGATGCCCTTCGGACTTTGCGTGAATTAAAGCTTCTTAGGCATCTTCGCCACGAAAATGTGATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTTAAAGATGTTTATTTGGTTTATGAACTGATGGATACGGATCTACATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGATCACTGCCAATATTTTCTCTTTCAGTTGCTCAGAGGCTTAAAGTATCTGCACTCTGCAAACATTCTACATAGGGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGATCTCAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGAAAGAATCAATTTATGACAGAGTATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGTGAGAATTATGGGACATCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAACTTCTCGGTAGGAAACCTATCTTCCCCGGTACCGAATGTTTGAATCAACTCAAATTGATAATTAACCTACTGGGTAGCCAGAGAGAGGAGGATCTTGAGTTCATAGACAATCCAAAGGCAAGGAGGTACATAAAATCTCTCCCATACTCTCCTGGGGCTCCGCTTTCCCGTCTTTATCCGGGCGCTCATTCTCTTGCAATTGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAAGCATTGCAGCATCCTTACATGTCCCCACTGTACGATCCAAACAGTAATCCTCCAGCTCAGGTACCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCTGAAGGTCTGGAAGAACACGCAGAAATGGCACGCTTCCACCCTGAACCTACTACGAGTAGTACCGTGGTGTTTTCTTGA 1161 42.98 MATPVEPPNGVRSQGKHYYSMWQTLFEIDIKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPGAHSLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMARFHPEPTTSSTVVFS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 89172052 89176150 + Tan0022679.1 Tan02g2001 744627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2001 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g2001 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan02g2001 386 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2001 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
Tan02g2001 386 CDD STKc_TEY_MAPK 26 361 - -
Tan02g2001 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Tan02g2001 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2001 386 FunFam Mitogen-activated protein kinase 18 126 - -
Tan02g2001 386 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2001 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Tan02g2001 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2001 386 FunFam Mitogen-activated protein kinase 116 345 - -
Tan02g2001 386 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1255 Tan-Chr1:12163295 Tan02g2001 Tan-Chr2:89172052 1.50E-163 dispersed
Tan02g2001 Tan-Chr2:89172052 Tan06g1971 Tan-Chr6:62495526 5.30E-116 dispersed
Tan02g2001 Tan-Chr2:89172052 Tan07g1607 Tan-Chr7:67447195 2.50E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67238 PF00069 Pkinase 1.70E-71 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2001 K20535 - csv:101213478 758.829