Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2020 ATGTTGAAATCAGGAGCCAAGCAGCAGCAGGTCAAAAGGGCCTCTTCTTCTCCTTCTTCTTCTTCTTCGCAAGGCAGCTCGAGAAAAGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAATGCTTCCTGCACTTACAAAGGCGTCCGCCAAAGGACTTGGGGTAAATGGGTTGCTGAGATTCGTGAGCCTAATCGTGGGGCTCGTCTCTGGCTTGGCACTTTTGACACCTCTCATGATGCTGCCATCGCTTATGACAATGCTGCTCGTCGTCTCTATGGCTCTGACGCTAAGCTCAATCTCCCTTCCTCTGTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCCTCTGTTTCTTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTGCTCCTCCTGCTCCTCCTCCCATGGTGGAAACCACTGCTGCACCACTCCCTGAAGAGAAGTCTGTGCAAAACAATGGCGGGATGGGATTTGGGGACGACCAAATTGGGGGGCTTTGGAGGTCTATGAGTATTAGCTTAGATGATTCTATTTGGGTTGAGGCAGCCATGTCTTTGGATTTTCCTGTCATGGAGGATCAGTCCATTTTTGCTGCTAATTTGGTCGATGCAAATGGATGGGATACACTGCAATGGTGTTAA 654 48.32 MLKSGAKQQQVKRASSSPSSSSSQGSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAIAYDNAARRLYGSDAKLNLPSSVSFSSSSSSSSSVSSSASSSSSSSSSSSSAPPAPPPMVETTAAPLPEEKSVQNNGGMGFGDDQIGGLWRSMSISLDDSIWVEAAMSLDFPVMEDQSIFAANLVDANGWDTLQWC 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 89445874 89446949 + Tan0009322.1 Tan02g2020 744646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2020 217 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 141 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan02g2020 217 Pfam AP2 domain 45 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 MobiDBLite consensus disorder prediction 103 131 - -
Tan02g2020 217 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Tan02g2020 217 MobiDBLite consensus disorder prediction 1 29 - -
Tan02g2020 217 CDD AP2 43 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 MobiDBLite consensus disorder prediction 1 44 - -
Tan02g2020 217 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2020 217 MobiDBLite consensus disorder prediction 103 144 - -
Tan02g2020 217 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2020 Tan-Chr2:89445874 Tan11g0296 Tan-Chr11:2356250 1.90E-30 dispersed
Tan05g0842 Tan-Chr5:6576367 Tan02g2020 Tan-Chr2:89445874 6.00E-30 transposed
Tan08g1423 Tan-Chr8:58148818 Tan02g2020 Tan-Chr2:89445874 1.60E-25 transposed
Tan01g4974 Tan-Chr1:115526265 Tan02g2020 Tan-Chr2:89445874 6.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26803 PF00847 AP2 1.20E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2020 - - - 0.0