Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2021 ATGGGACTTAGCTTGTTTCGTGCTGGGTTTTCTGTTCTTCTAGTTTTGGCTTTTGTTCTGTGCGATTTGGCCGTTTGTAATGGCGGAATCACGAGCAGTTTTGTAAGGCAAAACGATGTGTCGACGGATATGCCGCTCGATAGCGACGTGTTTAAGCCTCCTCCTGGTAGAAATGCCGCTCAACAGGTTCATATAACACAAGGGGATCTTGAGGGGAAGAGTGTAATTATCTCTTGGGTTACACCGGATAAACCTGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTCCGATTAGAAACCAAGCTGAAGGCTCTGTTGTTTCCTACAAGTACTTCAACTATACATCTGGTTACATTCATCACTGCACTATTGACAATTTAGAGTATGACACTAAATACTTCTACGTGATTGGATTTGGAAGTCTAACACGAAGGTTTTGGTTTACAACCCCTCCTAAAATTGGCCCTGATGTGCCTTATACTTTTGGTCTTATAGGAGATCTTGGTCAAACACACGATTCCAATAAAACACTTGCACATTATGAATTAAACCCAACAAAAGGACAGGCTATGTTGTTCCTTGGGGACCTGTCTTATGCAGACCGTTATCCGTTCCATGACAACACCAGGTGGGACACATGGGGGAGGTTCATAGAAAGAAGTGCAGCTTATCAACATTGGATTTGGACTACAGGGAATCATGAACTTGATTATGCTCCTGACATTGATGAAAGTGAACCATTTAAGCCTTTCTTGCATCGTTACCGTGTCCCATATAATGCAACAGATGGCTCATCACCGCTTTGGTACTCCATTAAGAGAGCTTCTGCTCATATAATTGTCTTGTCCTCTTACTCATCATATGTGAAAAGCAGCCCTCAATACAAATGGCTACAAAATGAGCTGCTAAAGGTAAACAGGGACCAGACTCCGTGGCTCATAGTTATTATGCATACTCCAATGTACAACAGTTATATTCACCATTACATGGAGGGAGAAAGCATGAGAGTGGTCTTCGAGCCGTGGTTCGTGAAGTATAAAGTTGACGTTGTCTTTGCCGGTCATGTTCATGCCTACGAACGATCTGAACGAATATCAAATATAGCATACAACGTTGTAAATGGGTTATGTTCTCCAGTTCGTGACCTAGATGCTCCAGTTTATATAACCATTGGAGATGGAGGAAACTCAGAAGGATTGGTGACTGAGATGACTGAACCACAGCCAAGCTACTCAGCTTACCGTGAAGCCAGCTTTGGCCATGGAACACTGGACATAAAGAACAGAACTCATGCCTACTTTGCTTGGCATCGCAACCAAGATGAATATTCTGTGGAAGCTGATTCCATATGGCTGCATAATCGACAATGGATAGCAGCAAGATGGAAGAATCTGATGTAG 1404 42.88 MGLSLFRAGFSVLLVLAFVLCDLAVCNGGITSSFVRQNDVSTDMPLDSDVFKPPPGRNAAQQVHITQGDLEGKSVIISWVTPDKPGSNRVVYWAENSPIRNQAEGSVVSYKYFNYTSGYIHHCTIDNLEYDTKYFYVIGFGSLTRRFWFTTPPKIGPDVPYTFGLIGDLGQTHDSNKTLAHYELNPTKGQAMLFLGDLSYADRYPFHDNTRWDTWGRFIERSAAYQHWIWTTGNHELDYAPDIDESEPFKPFLHRYRVPYNATDGSSPLWYSIKRASAHIIVLSSYSSYVKSSPQYKWLQNELLKVNRDQTPWLIVIMHTPMYNSYIHHYMEGESMRVVFEPWFVKYKVDVVFAGHVHAYERSERISNIAYNVVNGLCSPVRDLDAPVYITIGDGGNSEGLVTEMTEPQPSYSAYREASFGHGTLDIKNRTHAYFAWHRNQDEYSVEADSIWLHNRQWIAARWKNLM 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 89447452 89451988 - Tan0014732.1 Tan02g2021 744647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2021 467 Pfam Iron/zinc purple acid phosphatase-like protein C 386 445 IPR025733 -
Tan02g2021 467 Gene3D - 156 464 IPR029052 -
Tan02g2021 467 PANTHER ACID PHOSPHATASE RELATED 11 456 IPR039331 GO:0003993(InterPro)
Tan02g2021 467 Gene3D - 59 155 - -
Tan02g2021 467 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787(InterPro)
Tan02g2021 467 Pfam Purple acid Phosphatase, N-terminal domain 61 151 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Tan02g2021 467 CDD MPP_PAPs 157 455 IPR041792 -
Tan02g2021 467 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 59 155 - -
Tan02g2021 467 SUPERFAMILY Purple acid phosphatase, N-terminal domain 40 153 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Tan02g2021 467 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 156 463 - -
Tan02g2021 467 SUPERFAMILY Metallo-dependent phosphatases 157 459 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2021 K22390 - - csv:101210805 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2021 Tan-Chr2:89447452 Tan09g1465 Tan-Chr9:66681794 3.50E-162 dispersed
Tan06g2299 Tan-Chr6:74112939 Tan02g2021 Tan-Chr2:89447452 8.10E-70 transposed
Tan02g0773 Tan-Chr2:7368207 Tan02g2021 Tan-Chr2:89447452 2.70E-199 wgd
Tan02g2021 Tan-Chr2:89447452 Tan03g2040 Tan-Chr3:75380056 5.10E-182 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97