Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g2029 | ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTTTGTACAGAAATGATCAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAATCATCATCATCATCAACAACAACAACAAACCCAAACCCAAAACCCTTCTCTTCCAAATCACTTATCCTTCGGCGTCGGTCCCAGCCGTCGCAGCTTCATGATCAACGACTCTGACGAGCCTTCCAGATCAGCCTTCACCGTCATGAGACCCGCCGCCTTCGCCGCCGCCGCTGCTGCTGCCGCTGCTGGAGGCGGCATGAATTGTCAAGACTGCGGCAACCAAGCTAAGAAGGATTGTGCGTATTTGCGATGCAGGACTTGCTGTAAAAGCAGAGGCTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCCGCCAAACGCCGTGAGCGCCAGCAGCAGATTGCTGCCTTGCAACAACAACAGCAACAAGACCAGTTTCGTGGCGCCGAGAATTCCAAACGACAAAGAGAAACACAAACTCCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACCTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAACTCCGTTACACCGCCGCCGGCGAAAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACTTAATTGCTGGACCCTCCAACGCCGCCGCCACTTCCGCCACAACCTCCGCCGCCACCAGTACCCACCCCACCGCCGCAGCCGCCGCCCCGTTGCTCGACCCTTCTTTATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA | 1017 | 53.29 | MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNDQEIYNKGFEIWPQQYNHHHHQQQQQTQTQNPSLPNHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAFAAAAAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQDQFRGAENSKRQRETQTPATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLIAGPSNAAATSATTSAATSTHPTAAAAAPLLDPSLYPAPLNAFMAGTQFFPPSRS | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 89611945 | 89613696 | - | Tan0020596.1 | Tan02g2029 | 744655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 270 | 286 | - | - | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 49 | 86 | - | - | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 159 | 199 | - | - | |
Tan02g2029 | 338 | NCBIfam | LRP1 C-terminal domain | 210 | 258 | IPR006511 | - | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 163 | 179 | - | - | |
Tan02g2029 | 338 | Pfam | Domain of unknown function (DUF702) | 114 | 259 | - | - | |
Tan02g2029 | 338 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 332 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 264 | 286 | - | - | |
Tan02g2029 | 338 | NCBIfam | putative zinc finger domain, LRP1 type | 116 | 158 | IPR006510 | - | |
Tan02g2029 | 338 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1268 | Tan-Chr1:12325409 | Tan02g2029 | Tan-Chr2:89611945 | 5.00E-44 | dispersed | |
Tan01g4977 | Tan-Chr1:115557683 | Tan02g2029 | Tan-Chr2:89611945 | 7.80E-75 | dispersed | |
Tan02g2029 | Tan-Chr2:89611945 | Tan07g0788 | Tan-Chr7:12643802 | 6.40E-33 | dispersed | |
Tan01g4976 | Tan-Chr1:115557683 | Tan02g2029 | Tan-Chr2:89611945 | 2.60E-81 | wgd | |
Tan02g2029 | Tan-Chr2:89611945 | Tan03g2042 | Tan-Chr3:75397357 | 3.00E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26804 | PF05142 | DUF702 | 5.30E-67 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g2029 | K27807 | - | csv:101213154 | 509.99 |