Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2029 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTTTGTACAGAAATGATCAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAATCATCATCATCATCAACAACAACAACAAACCCAAACCCAAAACCCTTCTCTTCCAAATCACTTATCCTTCGGCGTCGGTCCCAGCCGTCGCAGCTTCATGATCAACGACTCTGACGAGCCTTCCAGATCAGCCTTCACCGTCATGAGACCCGCCGCCTTCGCCGCCGCCGCTGCTGCTGCCGCTGCTGGAGGCGGCATGAATTGTCAAGACTGCGGCAACCAAGCTAAGAAGGATTGTGCGTATTTGCGATGCAGGACTTGCTGTAAAAGCAGAGGCTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCCGCCAAACGCCGTGAGCGCCAGCAGCAGATTGCTGCCTTGCAACAACAACAGCAACAAGACCAGTTTCGTGGCGCCGAGAATTCCAAACGACAAAGAGAAACACAAACTCCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACCTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAACTCCGTTACACCGCCGCCGGCGAAAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACTTAATTGCTGGACCCTCCAACGCCGCCGCCACTTCCGCCACAACCTCCGCCGCCACCAGTACCCACCCCACCGCCGCAGCCGCCGCCCCGTTGCTCGACCCTTCTTTATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1017 53.29 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNDQEIYNKGFEIWPQQYNHHHHQQQQQTQTQNPSLPNHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAFAAAAAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQDQFRGAENSKRQRETQTPATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLIAGPSNAAATSATTSAATSTHPTAAAAAPLLDPSLYPAPLNAFMAGTQFFPPSRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 89611945 89613696 - Tan0020596.1 Tan02g2029 744655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2029 338 MobiDBLite consensus disorder prediction 270 286 - -
Tan02g2029 338 MobiDBLite consensus disorder prediction 49 70 - -
Tan02g2029 338 MobiDBLite consensus disorder prediction 49 86 - -
Tan02g2029 338 MobiDBLite consensus disorder prediction 159 199 - -
Tan02g2029 338 NCBIfam LRP1 C-terminal domain 210 258 IPR006511 -
Tan02g2029 338 MobiDBLite consensus disorder prediction 163 179 - -
Tan02g2029 338 Pfam Domain of unknown function (DUF702) 114 259 - -
Tan02g2029 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 332 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Tan02g2029 338 MobiDBLite consensus disorder prediction 264 286 - -
Tan02g2029 338 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Tan02g2029 338 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1268 Tan-Chr1:12325409 Tan02g2029 Tan-Chr2:89611945 5.00E-44 dispersed
Tan01g4977 Tan-Chr1:115557683 Tan02g2029 Tan-Chr2:89611945 7.80E-75 dispersed
Tan02g2029 Tan-Chr2:89611945 Tan07g0788 Tan-Chr7:12643802 6.40E-33 dispersed
Tan01g4976 Tan-Chr1:115557683 Tan02g2029 Tan-Chr2:89611945 2.60E-81 wgd
Tan02g2029 Tan-Chr2:89611945 Tan03g2042 Tan-Chr3:75397357 3.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26804 PF05142 DUF702 5.30E-67 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2029 K27807 - csv:101213154 509.99