Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2035 ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGGGAAGCGTCGGTGTTCTGCACGGCGGACGAGGCGGCGCTCTGTAATCTCTGTGATCATCGTGTCCACCATGCCAATAAGCTAGCTTCGAAGCACCGGCGGTTCTCTCTGCTCCACCCTGCCACGGCGGACGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATTCAATTCATTCGGCTAACGAACTCACTATGAAGCACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCGCCACTGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCGGAACTGGTGGTCGTGTTGGTTCTGATCTCAAGTCAAAGGGTTCTGTCAAGAAAGCGGCGGCTGTTTCTGCTGCCCAAATAGGATGCACACCAAGTGTTTGCGTTAATGCCCCAACGAACATACCTCCGGCAACGGCCGTGAACAAGGGCGGCGGAGGTCAGATTCCGACCGGGGGAGGTGGCTTGGCCAGTAGCATATCGGAATATCTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTTTCTCCCCCTTTTGTGGAGTGTGAAGGGCTGGGCTTGCCATTTGTGGAAGGTGATTTTAACAGTGGCTTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATGGTTCAGGATTAATGATGAACAATGGGTTGAAGGACACGAAGGATTTGGTAGTAAATTCTTCAAAAGTCAATAGAGTTTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACAAACCCATCTGCAGGCTTTAAGAGATCCAGATCTTTTTGGTATAATAATAACTAA 927 51.35 MKIQCDVCEKGEASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLHPATADAPVCDVCRERRGFLFCQQDRAILCRECDDSIHSANELTMKHDRFLLTGIKLSATAALYAPPPSDEKPIGTGGRVGSDLKSKGSVKKAAAVSAAQIGCTPSVCVNAPTNIPPATAVNKGGGGQIPTGGGGLASSISEYLMETLPGWHFEDFLDSSVSPPFVECEGLGLPFVEGDFNSGFSPSERLELWVPQGPPPALYGSGLMMNNGLKDTKDLVVNSSKVNRVWTDDGFTVPQITSTNPSAGFKRSRSFWYNNN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 89736909 89739155 - Tan0013852.1 Tan02g2035 744661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2035 308 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan02g2035 308 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Tan02g2035 308 Gene3D Classic Zinc Finger 1 94 - -
Tan02g2035 308 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan02g2035 308 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan02g2035 308 FunFam B-box zinc finger protein 21 1 98 - -
Tan02g2035 308 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270(InterPro)
Tan02g2035 308 CDD Bbox1_BBX-like 57 100 IPR049808 -
Tan02g2035 308 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan02g2035 308 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0919 Tan-Chr1:8736266 Tan02g2035 Tan-Chr2:89736909 9.00E-31 transposed
Tan06g1564 Tan-Chr6:24504335 Tan02g2035 Tan-Chr2:89736909 8.80E-29 transposed
Tan01g4984 Tan-Chr1:115611905 Tan02g2035 Tan-Chr2:89736909 1.80E-18 wgd
Tan02g0764 Tan-Chr2:7230661 Tan02g2035 Tan-Chr2:89736909 1.00E-49 wgd
Tan02g2035 Tan-Chr2:89736909 Tan03g2053 Tan-Chr3:75499335 2.60E-17 wgd
Tan02g2035 Tan-Chr2:89736909 Tan05g1250 Tan-Chr5:13163052 1.30E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26805 PF00643 zf-B_box 5.10E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2035 - - - 0.0