Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g2042 | ATGTCGTCAGCGTTCAGCGGCGATGAAACGGCTCCCTTCTTTGGCTTTCTCGGCGCCGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGGACGGCGAAGAGCGGGGTTGGAGTCGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCTAAATCGTATTACCTCTTCGATGGCTACGCGCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTGATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA | 498 | 52.41 | MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 89813358 | 89815341 | - | Tan0021032.1 | Tan02g2042 | 744668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g2042 | 165 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | Pfam | ATP synthase subunit C | 97 | 155 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 156 | - | - | |
Tan02g2042 | 165 | FunFam | V-type proton ATPase proteolipid subunit | 11 | 162 | - | - | |
Tan02g2042 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 13 | 77 | IPR035921 | - | |
Tan02g2042 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
Tan02g2042 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 134 | 157 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Tan02g2042 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 156 | IPR035921 | - | |
Tan02g2042 | 165 | Gene3D | - | 11 | 162 | IPR035921 | - | |
Tan02g2042 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 2 | 159 | - | GO:0016021(PANTHER) | |
Tan02g2042 | 165 | NCBIfam | V-type ATPase subunit C | 13 | 121 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g2042 | Tan-Chr2:89813358 | Tan02g2043 | Tan-Chr2:89825232 | 9.60E-75 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g2042 | K02155 | - | csv:101209079 | 288.5 |