Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2064 ATGTCCAACGCCGTCGAAGATCTCCTCCTCCGTCGCCGCCACTCCGATTTCCGATTTCATCTCCTTCCTTCTCACTCTCTCCATCGTGGCGACATGTCCTCGTCCTCGTCTTCTTCTTCTGCTGCTCAACCTATTCCTCTGTGTTTCCTTCAGCATCATCGGCCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGCCGTCTCACTCACGACGCACATTCTACAGTTGCTACACTCGATTTGAAACGAACATATGATATTAATGACTCTGAGGCTTTGGCTAGTGGACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCATTATCCATTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTCTTGATGGTCCTAATCTATCTACTAATGGTCGGTACGACAGCTCATTAGGCTTCTTGACCAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGTCTTACAGAGAAAACCACGACCAATCACATACGTTGGAAGGGATGCGAGAGGCGTGGACCTCAGGAGCTCAACGATCAAGTTGGTAGATTAAAGGCTGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTTGACGAACTCATAAGGATGAAGCAAGAACTTTTGAGAAATCTCGAGGAAAATGCAAGTCACAGAAAGAACCTTTTTATTACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAAGCTTGTTTTTCTGCGAGACAGTGTAGACTGATAATCAAAAGCACCACTGGGCCAATTGATTTGTATCTCTTGAGGACTGAAAAACAAGGGCTGAAAGACAGTACTTCCAAGCAAGCGAAAGTGTCTTCTGAACTGCAGAAGAATCATAAGATATCTACCAACAATGCTTATTGTTCTCCTCCCCAGGAGTCTCATGGAATGCACAGAATTTTACCTTTACATAATAACATAGACGATGATTATTGGTTTCAATCAAATTCTCAAGTGAGCATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 1239 42.29 MSNAVEDLLLRRRHSDFRFHLLPSHSLHRGDMSSSSSSSSAAQPIPLCFLQHHRPSPPSDQSNACDGRLTHDAHSTVATLDLKRTYDINDSEALASGRAVASEQRMRSNDSSCEPLSIANEKQNKKLKLQKNSKSRTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLTEKTTTNHIRWKGCERRGPQELNDQVGRLKAEVKSLYAEERRLDELIRMKQELLRNLEENASHRKNLFITEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSARQCRLIIKSTTGPIDLYLLRTEKQGLKDSTSKQAKVSSELQKNHKISTNNAYCSPPQESHGMHRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90100912 90105681 - Tan0005021.1 Tan02g2064 744690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2064 412 MobiDBLite consensus disorder prediction 96 152 - -
Tan02g2064 412 SUPERFAMILY E2F-DP heterodimerization region 232 336 IPR037241 -
Tan02g2064 412 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Tan02g2064 412 Gene3D - 150 222 IPR036388 -
Tan02g2064 412 MobiDBLite consensus disorder prediction 102 119 - -
Tan02g2064 412 CDD E2F_DD 231 338 IPR032198 GO:0046983(InterPro)
Tan02g2064 412 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan02g2064 412 PANTHER TRANSCRIPTION FACTOR E2F 99 407 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan02g2064 412 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan02g2064 412 Coils Coil 243 267 - -
Tan02g2064 412 Gene3D - 227 338 - -
Tan02g2064 412 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Tan02g2064 412 FunFam E2F transcription factor 1 149 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2064 Tan-Chr2:90100912 Tan05g0088 Tan-Chr5:799927 2.20E-59 dispersed
Tan02g2064 Tan-Chr2:90100912 Tan05g0087 Tan-Chr5:799927 2.20E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26812 PF16421 E2F_CC-MB 1.20E-26 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2064 K06620 - csv:101211469 657.907