Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2064 ATGTCCAACGCCGTCGAAGATCTCCTCCTCCGTCGCCGCCACTCCGATTTCCGATTTCATCTCCTTCCTTCTCACTCTCTCCATCGTGGCGACATGTCCTCGTCCTCGTCTTCTTCTTCTGCTGCTCAACCTATTCCTCTGTGTTTCCTTCAGCATCATCGGCCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGCCGTCTCACTCACGACGCACATTCTACAGTTGCTACACTCGATTTGAAACGAACATATGATATTAATGACTCTGAGGCTTTGGCTAGTGGACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCATTATCCATTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTCTTGATGGTCCTAATCTATCTACTAATGGTCGGTACGACAGCTCATTAGGCTTCTTGACCAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGTCTTACAGAGAAAACCACGACCAATCACATACGTTGGAAGGGATGCGAGAGGCGTGGACCTCAGGAGCTCAACGATCAAGTTGGTAGATTAAAGGCTGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTTGACGAACTCATAAGGATGAAGCAAGAACTTTTGAGAAATCTCGAGGAAAATGCAAGTCACAGAAAGAACCTTTTTATTACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAAGCTTGTTTTTCTGCGAGACAGTGTAGACTGATAATCAAAAGCACCACTGGGCCAATTGATTTGTATCTCTTGAGGACTGAAAAACAAGGGCTGAAAGACAGTACTTCCAAGCAAGCGAAAGTGTCTTCTGAACTGCAGAAGAATCATAAGATATCTACCAACAATGCTTATTGTTCTCCTCCCCAGGAGTCTCATGGAATGCACAGAATTTTACCTTTACATAATAACATAGACGATGATTATTGGTTTCAATCAAATTCTCAAGTGAGCATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 1239 42.29 MSNAVEDLLLRRRHSDFRFHLLPSHSLHRGDMSSSSSSSSAAQPIPLCFLQHHRPSPPSDQSNACDGRLTHDAHSTVATLDLKRTYDINDSEALASGRAVASEQRMRSNDSSCEPLSIANEKQNKKLKLQKNSKSRTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLTEKTTTNHIRWKGCERRGPQELNDQVGRLKAEVKSLYAEERRLDELIRMKQELLRNLEENASHRKNLFITEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSARQCRLIIKSTTGPIDLYLLRTEKQGLKDSTSKQAKVSSELQKNHKISTNNAYCSPPQESHGMHRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90100912 90105681 - Tan0005021.1 Tan02g2064 744690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2064 412 MobiDBLite consensus disorder prediction 96 152 - -
Tan02g2064 412 SUPERFAMILY E2F-DP heterodimerization region 232 336 IPR037241 -
Tan02g2064 412 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Tan02g2064 412 Gene3D - 150 222 IPR036388 -
Tan02g2064 412 MobiDBLite consensus disorder prediction 102 119 - -
Tan02g2064 412 CDD E2F_DD 231 338 IPR032198 GO:0046983(InterPro)
Tan02g2064 412 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan02g2064 412 PANTHER TRANSCRIPTION FACTOR E2F 99 407 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan02g2064 412 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan02g2064 412 Coils Coil 243 267 - -
Tan02g2064 412 Gene3D - 227 338 - -
Tan02g2064 412 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Tan02g2064 412 FunFam E2F transcription factor 1 149 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2064 K06620 - - csv:101211469 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2064 Tan-Chr2:90100912 Tan05g0088 Tan-Chr5:799927 2.20E-59 dispersed
Tan02g2064 Tan-Chr2:90100912 Tan05g0087 Tan-Chr5:799927 2.20E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26812 PF16421 E2F_CC-MB 1.20E-26 No_clan Tan TF