Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2082 ATGGCGGCACGAATTTCGTTCTTGTTGGGTCTTTCTACTCTGCTGCTGTTGGTACCAGGTGGGTTTTCGACGAGTTTCACTTTTGTAAACAAATGTGGATTCACAGTCTGGCCGGGCGTTCTGTCGAACGGCGGCGTTCCGCCGCTTCCCACCACTGGCTTCTCTCTCCAGACCGAAGAGTCCAAGACACTGTCGGCGCCAGCGTCTTGGGGTGGCCGTTTCTGGGGCCGAACACTCTGTTCCGAAGATTCCACCGGGAAATTCACCTGCGCCACCGGCGATTGCGGCTCCAACAAACTCGAGTGCGCTGGAAGCGGAGCAACGCCGCCGGCGACTCTGGCGGAGTTCACTCTCGACGGCTCCGGCGGTCTTGATTTCTTCGATGTCAGCTTGGTGGACGGTTACAATCTTCCGATGATGGTGGTGCCTCAGGGCGGCTCCGGCGACAACTGCACGAGCACCGGCTGCGTGGTGGATCTGAACAGCGCGTGTCCGTCGGAGCTGCGCGTGACGAGCGGCGACGGGAGAGAGGGCGTCGCGTGTAAAAGCGCGTGTGATGCGTTCAACCAACCGCAGTATTGTTGCACGGGCGCGTACCAAACACCGGACACTTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAAAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGATAAGACGAGCACTTTCACATGCGCCAGAGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGGTAA 756 58.2 MAARISFLLGLSTLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTEESKTLSAPASWGGRFWGRTLCSEDSTGKFTCATGDCGSNKLECAGSGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGDNCTSTGCVVDLNSACPSELRVTSGDGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCARADYVITFCPSPNTR 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90348461 90350869 + Tan0009790.2 Tan02g2082 744708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2082 251 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Tan02g2082 251 PIRSF PR5 1 251 IPR001938 -
Tan02g2082 251 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Tan02g2082 251 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Tan02g2082 251 Gene3D Thaumatin 24 246 IPR037176 -
Tan02g2082 251 PANTHER OS03G0233200 PROTEIN 15 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Tan02g2082 251 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Tan02g2082 251 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Tan02g2082 251 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Tan02g2082 251 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Tan02g2082 251 CDD TLP-PA 25 245 - -
Tan02g2082 251 SMART tha2 26 246 IPR001938 -
Tan02g2082 251 Pfam Thaumatin family 30 246 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5033 Tan-Chr1:115914840 Tan02g2082 Tan-Chr2:90348461 1.50E-113 dispersed
Tan01g5034 Tan-Chr1:115914840 Tan02g2082 Tan-Chr2:90348461 1.90E-114 dispersed
Tan02g2082 Tan-Chr2:90348461 Tan05g1161 Tan-Chr5:10679264 8.80E-96 dispersed
Tan02g2081 Tan-Chr2:90348461 Tan02g2082 Tan-Chr2:90348461 1.90E-148 tandem
Tan02g2082 Tan-Chr2:90348461 Tan02g2083 Tan-Chr2:90391267 1.00E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2082 - - - 0.0