Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2092 ATGGGACAAGATGGACTGAAATTTTACCCAACAGAAGATTTTATTATGGAAGGACGTTTCGTGTTCTGGAAACCGGTTTTTGTAGTTTTCGCACTCCTGGATGTTGCTTCTGCTACGCTATCTCCTTCTGGTGTAAACTACGAAGTCGTGGCTTTGATGGCCATAAAAAACGATTTAATAGATCCCCATAATGTTTTGGAGAATTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACTTGTTCTCCAGATGGATACGTTTCTGCTTTGGGGCTGCCGAGCCAGAGTTTGTCTGGGGTCTTATCGCCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTCTTGCTTCAGAACAATGACATTTCGGGTCCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTCGATCTCTCCAACAATGTATTTCATGGCGAAATACCCAGTTCCCTCGGGGACTTGAAGAAGCTGAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAGTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACGTTCAAGATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTGCCATCTTTCCGGAGCCGTTGTCGTTTGCCCCAGATGCTCTAGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATATAGACACAACCAGCAAATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACTGATCATTTCAATGCAAAGAATATCTTGGGAAGAGGTGGATTTGGAATTGTGTACAAGGGATGCTTAAACGATGGGACTCTGGTAGCGGTTAAAAGGTTAAAGGACTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTTGAGATGATAAGCTTGGCTGTACATCGTAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCTTTCATGCCCAATGGAAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGACAATGAGAAAGAGAATAGCCTTGGGCACTGCTAGAGGATTGGTGTACTTGCATGAACAGTGCGACCCCAAAATTATCCATCGTGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGATTTCGAGGCCGTCGTTGGAGACTTCGGGTTGGCTAAACTTCTAGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAAACTGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTAATTACGGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTGGACTGGGTAACTACACTCTTCTAG 1611 44.75 MGQDGLKFYPTEDFIMEGRFVFWKPVFVVFALLDVASATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFHGEIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAIFPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNAKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWTMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVTTLF 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90498898 90503169 + Tan0021316.2 Tan02g2092 744718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2092 536 ProSiteProfiles Protein kinase domain profile. 313 536 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2092 536 FunFam Somatic embryogenesis receptor-like kinase 1 390 536 - -
Tan02g2092 536 FunFam Somatic embryogenesis receptor kinase 1 282 389 - -
Tan02g2092 536 Gene3D Transferase(Phosphotransferase) domain 1 390 536 - -
Tan02g2092 536 Pfam Protein kinase domain 314 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2092 536 SUPERFAMILY L domain-like 46 207 - -
Tan02g2092 536 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515(InterPro)
Tan02g2092 536 Gene3D Ribonuclease Inhibitor 45 224 IPR032675 -
Tan02g2092 536 SUPERFAMILY Protein kinase-like (PK-like) 289 519 IPR011009 -
Tan02g2092 536 SMART serkin_6 313 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g2092 536 FunFam Putative LRR receptor-like serine/threonine-protein kinase 45 225 - -
Tan02g2092 536 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Tan02g2092 536 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 27 534 - -
Tan02g2092 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g2092 536 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Tan02g2092 536 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2092 Tan-Chr2:90498898 Tan11g0395 Tan-Chr11:3166273 3.40E-153 dispersed
Tan02g2091 Tan-Chr2:90498898 Tan02g2092 Tan-Chr2:90498898 9.90E-261 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67240 PF00069 Pkinase 8.10E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2092 - - - 0.0