Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g2094 | ATGCTTCGTCTCCATAGCTCACCAATTTATGAATTAGTTTCGTTTGTTGATCTTCTCCGTACCTTCCTTCCTCTCTTTCTTCCTTTGCGAATCACGCACATCTATACATATATTCAAATGGCGGAGGATATGTACGGCATGCGCTCCACTCCCGATTTCTCCGCTAAGTCCTTCGTTTCACCGGAGAATCTTATCCTTCCCGTCGATTACCGGACCGTCCTTTCATCCACAAACTTCCGCGATCGGATTCCTATGTTCGGATCCGATGAATTACTTTCCGCTGCTTCCGCCATATCCGAAGCTGAAGCACCTTCCATCACTCCAGATTTTCCGCTCGGAGAAGATGTTCTCACCGTCATCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTTTGCTTCAAGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGATAGCAGACTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCATAAACGAAACGCTATTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGCGACATGCTGGTAAAGTATAGATCAGATCTCTCAAGGCCTTTTCATGAAGCTTCGTCCTTCTTGAACAACATTGAACTGCAACTTAGCAGCCTCTGTGCTGGTGTCTCCGCCAGAAGCCCTTCCAATGAGGATGCTGTGTCATCAGATGATGAGCTTAATTGGGGAGAAAGGGAATTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTACTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATTGCGCTGGCAGAGACAACGGGGCTAGACCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAACTATGGATAATGTGGCTGAACAATTTTACGGTAGGCTTGAGTCATGA | 1086 | 45.4 | MLRLHSSPIYELVSFVDLLRTFLPLFLPLRITHIYTYIQMAEDMYGMRSTPDFSAKSFVSPENLILPVDYRTVLSSTNFRDRIPMFGSDELLSAASAISEAEAPSITPDFPLGEDVLTVIKAKIVSHPTYPRLLQAYIDCQKVGAPPEIADLLEEIRRENDSHKRNAISTCFGADPELDEFMEAYCDMLVKYRSDLSRPFHEASSFLNNIELQLSSLCAGVSARSPSNEDAVSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQFATMDNVAEQFYGRLES | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 90515859 | 90532288 | + | Tan0008903.1 | Tan02g2094 | 744720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g2094 | 361 | Pfam | KNOX1 domain | 120 | 161 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g2094 | 361 | SUPERFAMILY | Homeodomain-like | 277 | 348 | IPR009057 | - | |
Tan02g2094 | 361 | CDD | homeodomain | 290 | 340 | IPR001356 | GO:0003677(InterPro) | |
Tan02g2094 | 361 | SMART | KNOX2_2 | 168 | 219 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g2094 | 361 | Pfam | ELK domain | 257 | 277 | IPR005539 | GO:0003677(InterPro) | |
Tan02g2094 | 361 | Pfam | KNOX2 domain | 172 | 218 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g2094 | 361 | SMART | KNOX1_2 | 118 | 162 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g2094 | 361 | ProSitePatterns | 'Homeobox' domain signature. | 314 | 337 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan02g2094 | 361 | SMART | HOX_1 | 278 | 343 | IPR001356 | GO:0003677(InterPro) | |
Tan02g2094 | 361 | Gene3D | - | 275 | 349 | - | - | |
Tan02g2094 | 361 | ProSiteProfiles | 'Homeobox' domain profile. | 276 | 339 | IPR001356 | GO:0003677(InterPro) | |
Tan02g2094 | 361 | SMART | ELK_2 | 256 | 277 | IPR005539 | GO:0003677(InterPro) | |
Tan02g2094 | 361 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 136 | 349 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan02g2094 | 361 | Pfam | Homeobox KN domain | 296 | 335 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g2094 | Tan-Chr2:90515859 | Tan09g2258 | Tan-Chr9:72654040 | 1.00E-84 | dispersed | |
Tan02g2094 | Tan-Chr2:90515859 | Tan04g1268 | Tan-Chr4:12193149 | 4.50E-125 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26813 | PF03791 | KNOX2 | 3.30E-24 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g2094 | - | - | - | 0.0 |