Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2094 ATGCTTCGTCTCCATAGCTCACCAATTTATGAATTAGTTTCGTTTGTTGATCTTCTCCGTACCTTCCTTCCTCTCTTTCTTCCTTTGCGAATCACGCACATCTATACATATATTCAAATGGCGGAGGATATGTACGGCATGCGCTCCACTCCCGATTTCTCCGCTAAGTCCTTCGTTTCACCGGAGAATCTTATCCTTCCCGTCGATTACCGGACCGTCCTTTCATCCACAAACTTCCGCGATCGGATTCCTATGTTCGGATCCGATGAATTACTTTCCGCTGCTTCCGCCATATCCGAAGCTGAAGCACCTTCCATCACTCCAGATTTTCCGCTCGGAGAAGATGTTCTCACCGTCATCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTTTGCTTCAAGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGATAGCAGACTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCATAAACGAAACGCTATTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGCGACATGCTGGTAAAGTATAGATCAGATCTCTCAAGGCCTTTTCATGAAGCTTCGTCCTTCTTGAACAACATTGAACTGCAACTTAGCAGCCTCTGTGCTGGTGTCTCCGCCAGAAGCCCTTCCAATGAGGATGCTGTGTCATCAGATGATGAGCTTAATTGGGGAGAAAGGGAATTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTACTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATTGCGCTGGCAGAGACAACGGGGCTAGACCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAACTATGGATAATGTGGCTGAACAATTTTACGGTAGGCTTGAGTCATGA 1086 45.4 MLRLHSSPIYELVSFVDLLRTFLPLFLPLRITHIYTYIQMAEDMYGMRSTPDFSAKSFVSPENLILPVDYRTVLSSTNFRDRIPMFGSDELLSAASAISEAEAPSITPDFPLGEDVLTVIKAKIVSHPTYPRLLQAYIDCQKVGAPPEIADLLEEIRRENDSHKRNAISTCFGADPELDEFMEAYCDMLVKYRSDLSRPFHEASSFLNNIELQLSSLCAGVSARSPSNEDAVSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQFATMDNVAEQFYGRLES 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90515859 90532288 + Tan0008903.1 Tan02g2094 744720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2094 361 Pfam KNOX1 domain 120 161 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2094 361 SUPERFAMILY Homeodomain-like 277 348 IPR009057 -
Tan02g2094 361 CDD homeodomain 290 340 IPR001356 GO:0003677(InterPro)
Tan02g2094 361 SMART KNOX2_2 168 219 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2094 361 Pfam ELK domain 257 277 IPR005539 GO:0003677(InterPro)
Tan02g2094 361 Pfam KNOX2 domain 172 218 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2094 361 SMART KNOX1_2 118 162 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g2094 361 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan02g2094 361 SMART HOX_1 278 343 IPR001356 GO:0003677(InterPro)
Tan02g2094 361 Gene3D - 275 349 - -
Tan02g2094 361 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677(InterPro)
Tan02g2094 361 SMART ELK_2 256 277 IPR005539 GO:0003677(InterPro)
Tan02g2094 361 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 349 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g2094 361 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2094 Tan-Chr2:90515859 Tan09g2258 Tan-Chr9:72654040 1.00E-84 dispersed
Tan02g2094 Tan-Chr2:90515859 Tan04g1268 Tan-Chr4:12193149 4.50E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26813 PF03791 KNOX2 3.30E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2094 - - - 0.0