Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2140 ATGGAAAATCCCATTTTTATTGTAATAAGCTTCAGTCTTCTTCTTCTTCTTCAAATGTGTTTCATTTCTTCTTCTTCTTCTTCTCCAGTGACCGATCCTGAACAAGTAGTTGAAGAAGTTCTAACGAGCATCAAGAATGCAACAAGGAGGAGGAGGAATTTGGGGTTCCTGTCGTGTGGAACCGGAAACCCAATAGACGACTGTTGGCGGTGCGATCCGAATTGGGAGAAGAACCGAAAGCGGCTAGCCGAGTGCGGCATTGGGTTCGGAAAGCGAGCCATCGGCGGCAGAGACGGGAAATTCTACATAGTGACGGACCCATCGGACAAGGACGTGGTGAACCCAAAGCAGGGGACTCTGCGGCACGCGGTAATCCAAAACGAACCCTTATGGATCATCTTCAACAGGGACATGGTGATCAAATTAAAAGCAGAGTTAATCATGAACTCTTTCAAAACCATCGACGGGCGTGGGGCATCGGTACACATCGCCGGTGGGCCGTGCATTACAATTCAGTTCGTGACGAACATCATAATCCACGGGGTGAACATTCACGACTGCAAACAGGGAGGGAATATGAACGTAAGAGATTCGCCGGAGCATTACGGTTGGAGGACTGTGTCGGACGGTGATGGGGTATCGATATTTGGAGGAAGCCATATTTGGATCGACCATTGTTCTTTGTCGAATTGCCGTGATGGGTTGATTGATGCGATTCATGGGTCTACGGCTATCACTATTTCCAACAATTTTATGACTCATCACAACAAAGTTATGCTTTTGGGACATAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGCCTTGTGCAAAGAATGCCACGGTGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACACATTGGATTATGTACGCCATTGGTGGAAGTGCATCTCCCACTATCAATAGCCAAGGAAATAGATACCTTGCTCCTAATAACCAAGATAGAAAAGAGGTGACGAAGCGTGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGATCCGAGGAGATTTGA 1083 46.17 MENPIFIVISFSLLLLLQMCFISSSSSSPVTDPEQVVEEVLTSIKNATRRRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLAECGIGFGKRAIGGRDGKFYIVTDPSDKDVVNPKQGTLRHAVIQNEPLWIIFNRDMVIKLKAELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGVNIHDCKQGGNMNVRDSPEHYGWRTVSDGDGVSIFGGSHIWIDHCSLSNCRDGLIDAIHGSTAITISNNFMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQDRKEVTKREDAPQSKWKNWNWRSEEI 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90832898 90836297 - Tan0018420.1 Tan02g2140 744766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2140 360 SUPERFAMILY Pectin lyase-like 52 358 IPR011050 -
Tan02g2140 360 FunFam Pectate lyase 62 359 - -
Tan02g2140 360 Pfam Pectate lyase 148 326 IPR002022 -
Tan02g2140 360 MobiDBLite consensus disorder prediction 330 360 - -
Tan02g2140 360 Gene3D - 62 360 IPR012334 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 353 360 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Tan02g2140 360 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Tan02g2140 360 PANTHER PECTATE LYASE 18-RELATED 17 358 IPR045032 GO:0030570(InterPro)
Tan02g2140 360 SMART amb_all 137 334 IPR002022 -
Tan02g2140 360 MobiDBLite consensus disorder prediction 334 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2140 Tan-Chr2:90832898 Tan05g2885 Tan-Chr5:81256955 2.20E-172 dispersed
Tan02g2140 Tan-Chr2:90832898 Tan06g2325 Tan-Chr6:74602422 8.30E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2140 K01728 - csv:101208076 650.588