Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2150 ATGGAAAATGGCTTCTCTTCTCCTCGAAGTGATGCGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTGAAAAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTCGACGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACATGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAACACGTATTTCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCCTTCAAATCTTTAGAAATGGGTCAGATAGGTATGATGATAGCCAGTTCCTCAGAGGAGAGGAACTATTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGCATGAGGACAAAGACTTTGGTGACACTTCTTCCACAAAGAAAGCCAGAGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTTAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATTCTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGTTTTGTTGTTGGTATGAAACATACTGAATCGAGTTCAAAGGATGGAGAGGGAAACTTCAGCATTCGTAGCTCATTAGTCGTGCCACAAAATGATGTCACGAATAGCAACTTCAGTTTTTCAGGTGATAACTTCCTTCTTCAGAATGTAGACTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCGGAGCCAAAAAGAGCTGCTGCTAGAAGTGTTCCAGAACCGATAAAGACACGGTGTACGCAGATGAAATTCAACACCTCTTTTGCCTCTGTTGAATCTGAAGGGAAGTTTGCAACATTTGATCCAAGCAACAGAACATGTTACCCTTGGGTTGAAGCTCCAGAGATAAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAGTCAGTTCTCTCCAACAGTTCCACCACATCAAGTTCAAATCGACCAACTACAGTCGATTTCATCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGACATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAATCAACAGATTGGCCACCTAAATCTACCAAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAAAGAGATCAATGACCATTTTGAGCCCATTTCAACTACTAGTCCTCCTTTGGGCATGAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGATTACCTTTTGCAACCTTTGATGAAGACTTGCAGGGCTATTTGCTTCAAGATGGTTGTTATCCAAAGAACCTTGAACAGATAATAGAGTTTCCAGATTATGGTGATCCAGGTATCTTCACTGAAGGTCCAACTCACCTTTACGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCAGTGATAGATGAAGGCCTATTTATTGCATGA 1755 41.31 MENGFSSPRSDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIQEGRDIEGHDVIEGLQIFRNGSDRYDDSQFLRGEELFSVRKRKDVDKHEDKDFGDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTESSSKDGEGNFSIRSSLVVPQNDVTNSNFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAAARSVPEPIKTRCTQMKFNTSFASVESEGKFATFDPSNRTCYPWVEAPEIKFKQESKPLVHLEGDFSQFSPTVPPHQVQIDQLQSISSISSGRSATEKDIASSIESKPPYSEDCNQQIGHLNLPKTPTDSFSGKAKSFKEINDHFEPISTTSPPLGMKNQNFNLSCISTDLGSGLPFATFDEDLQGYLLQDGCYPKNLEQIIEFPDYGDPGIFTEGPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 90886131 90889708 + Tan0019020.1 Tan02g2150 744776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2150 584 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Tan02g2150 584 SUPERFAMILY CheY-like 16 140 IPR011006 -
Tan02g2150 584 FunFam Two-component response regulator 17 172 - -
Tan02g2150 584 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Tan02g2150 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Tan02g2150 584 MobiDBLite consensus disorder prediction 426 451 - -
Tan02g2150 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Tan02g2150 584 Gene3D - 17 162 - -
Tan02g2150 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Tan02g2150 584 FunFam Two-component response regulator 194 257 - -
Tan02g2150 584 Gene3D - 194 257 - -
Tan02g2150 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Tan02g2150 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 328 IPR045279 GO:0009736(InterPro)
Tan02g2150 584 CDD REC_typeB_ARR-like 19 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2150 Tan-Chr2:90886131 Tan10g1051 Tan-Chr10:9414877 7.10E-80 dispersed
Tan02g2150 Tan-Chr2:90886131 Tan10g1050 Tan-Chr10:9414877 7.10E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26815 PF00072 Response_reg 1.20E-24 CL0304 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2150 K14491 - csv:101204370 1037.71