Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2190 ATGGATATTTCCGAGGTTGAAGAAAATCTATTTGCAGCAAGTGATGCCAAGCTTCATGGAGGAATGTGCAAGACTCTTTCTGCAATATACTGTAAAGTATTAACAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAGATCTGGTATCCAGGCATTATGTTCCTTGCATGTAGCACTTGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAAAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTTCTGTTGAAATTTGAGAAGGTAAAAAGTGCTCTACAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCGCAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTAGGGAGTACTCAATTTTTCCTTGATCCTTTGGAGAAGCAAGTTGGTGATGACATTATTTTCTTGCTCCAACAAGGACGAACATTTAGCAACACTGTTGACAACAGTGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATCGATAGATCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTATTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGGAAATGGACAAGCCTTTGAAAGGCAGCTAACAAAGCTTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAACAGATTCCCCTTCCACCTGATGAGTTGAAGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGAATTTGCATTGAGAAGTGGTTAAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTCAAGGGCCTGATTGCAAACTGGTGTGAACAGCATGGACTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGAATCAGAGTCTCTAAATTTGTCACCTATGGACACTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTTCCGCTAGAAGAAAATGGTACAACTGAGGAGATCAAAGGAAATGTAGTGGATGATAACTCTGCTGAAGACCAAGAGTCAGGTACAAATATGCTTACTAGATACGAACACTATTTGAAAGTCTTGAATGAAGAAGCAGACCTGAGGAAAAAGTCGACGGTTGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATTTTTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTGCAAGATCAAAATATCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAGACAATGCTGGGAGAAGGTGTGATTTCATTGTTGGAGGAAATGATTATGAACCCCAATTCCTACGGATCTGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCGAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTTCACGCCAATACCGAAACTCTATGCAAGCTTGATGCTCTTCACACACTTTACAATCTATCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGCAACCCCTCTCGATCGAACATGGACCGAAAAATGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATTAGGTAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGCGAACCCATTGAACAGGAACAAGCAGTGGCTTGTCTCTTGATTCTTTGCAATGGGAATGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATGTCTGTGAACGGGACAGCGAGAGGCAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGAGCAACGACAACGGGAGCCACCGACGCCACCGACACCGACACTGAAACCGACACCAGAACTGACTGAGCAATCAGAGAGTAGCGAGACATCCATGCCTGTGGCAGAATCAAAGCCGCCACTGTGCAAGTCAATTTCAAGAAGAAAACCAGGAAAAGCTTTAAGTTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2337 43.6 MDISEVEENLFAASDAKLHGGMCKTLSAIYCKVLTIFPSLEAARPRSRSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKSALQDSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIIFLLQQGRTFSNTVDNSELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKLGSFTSKPKNRRLEQIPLPPDELKCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQHGLPVPDGPPDSLDLNYWRLALSESESLNLSPMDTVGSCKLKDVKVVPLEENGTTEEIKGNVVDDNSAEDQESGTNMLTRYEHYLKVLNEEADLRKKSTVVEQIRLLLKDDEEARIFMGANGFVQGLLRYLEIAVQDQNIKAQESGAMALFNLAVNNDRNKETMLGEGVISLLEEMIMNPNSYGSATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIRGLQSLLATPLDRTWTEKCIAILINLASSELGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPPTPPTPTLKPTPELTEQSESSETSMPVAESKPPLCKSISRRKPGKALSFLWKSKSYSVYQC 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91126656 91131705 - Tan0021427.1 Tan02g2190 744816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2190 778 Gene3D - 404 716 IPR011989 -
Tan02g2190 778 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g2190 778 MobiDBLite consensus disorder prediction 224 247 - -
Tan02g2190 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Tan02g2190 778 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Tan02g2190 778 SUPERFAMILY RING/U-box 279 355 - -
Tan02g2190 778 CDD RING-Ubox_PUB 280 332 IPR045210 -
Tan02g2190 778 PANTHER U BOX DOMAIN-CONTAINING 22 713 - -
Tan02g2190 778 MobiDBLite consensus disorder prediction 221 254 - -
Tan02g2190 778 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g2190 778 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g2190 778 MobiDBLite consensus disorder prediction 728 744 - -
Tan02g2190 778 MobiDBLite consensus disorder prediction 711 756 - -
Tan02g2190 778 SUPERFAMILY ARM repeat 431 697 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1239 Tan-Chr1:11948897 Tan02g2190 Tan-Chr2:91126656 5.30E-80 dispersed
Tan01g1240 Tan-Chr1:11948897 Tan02g2190 Tan-Chr2:91126656 3.40E-53 dispersed
Tan02g2190 Tan-Chr2:91126656 Tan04g0075 Tan-Chr4:570901 9.00E-232 dispersed
Tan02g2190 Tan-Chr2:91126656 Tan02g2191 Tan-Chr2:91126656 0.00E+00 tandem
Tan05g0992 Tan-Chr5:8302042 Tan02g2190 Tan-Chr2:91126656 7.40E-19 transposed
Tan11g1395 Tan-Chr11:12377098 Tan02g2190 Tan-Chr2:91126656 2.30E-10 transposed
Tan02g2190 Tan-Chr2:91126656 Tan04g0074 Tan-Chr4:570901 9.00E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2190 - - - 0.0