Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2212 ATGGCGGAAGAAGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGACGGGAAGAGTGAAGAAGATAATGAAGATCGATAAGGAGGTCGGCAAAGTGAACTCAGAAGCCCTGTTTCTCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAATCGCCGTCAAAAGACATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCACTGTTGTTGATAAAGCGGTTCCTCAAGGAACCCGTCGAATCGATGATTTCTTTCGTCCGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCCTAG 423 52.96 MAEEESGEAIRPEFPTGRVKKIMKIDKEVGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRTVVDKAVPQGTRRIDDFFRPPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91241927 91242474 - Tan0016879.1 Tan02g2212 744838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2212 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
Tan02g2212 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 11 105 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Tan02g2212 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Tan02g2212 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Tan02g2212 140 MobiDBLite consensus disorder prediction 89 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2212 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan09g0222 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan09g0223 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan02g1294 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan02g1295 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan09g2376 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Tan09g0222 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan09g0223 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan02g1294 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan02g1295 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan09g2376 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.6e-51 199.5
Tan09g2376 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.2e-38 155.2
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1294 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan02g1295 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan09g0222 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g0223 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g2376 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.8e-50 194.9
Tan02g2212 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 4.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26817 PF00808 CBFD_NFYB_HMF 4.70E-20 CL0012 Tan TF