Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2290 ATGGGAAGAGGGAAGGTGGAGCTAAAGAAGATAGAGAACAAAATAAATCGACAAGTTACCTTCACAAAACGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCACTCGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGTTAAGACGTTGGAGAGGTATCAAAGGCATAGCTATGGAGCATTGGAAGCCCCTCATCATCCAAAGGACACCGAGAGATGGTACCAAGAATATTTGGAGCTGAAAGCAGAAGTGGAAGCCCTACAGCATTCACAGAGACGATTTCTTGGAGAAGATTTGGATGATTTGGAGACAAAGGAACTGGACCAACTTGAAATTCAATTAGAAATGTCTTTAAAGCAAATCAGGTCCGCTAAGAACCAAACGGTGTTTGATCAGTTATCTGATCTACAAAAAAAGTTGGAAGAAAGTAGTGCAGCTCTTCATTCATCATGGGGAACTTCAGAACCCAACAATTTGCAATACTGCCGACAACCTGAAGGCTTTCTTCAACGCAATAATATTGCATTGGAAAATAGTTACAATCCCGCAGAAGTTTCAAGTCAAGAAAATGCTATAAATTATGGCCCAGAAGGTAATGGGTTGCCTTCACATTGGATGATGCTTTGA 678 40.86 MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIVKTLERYQRHSYGALEAPHHPKDTERWYQEYLELKAEVEALQHSQRRFLGEDLDDLETKELDQLEIQLEMSLKQIRSAKNQTVFDQLSDLQKKLEESSAALHSSWGTSEPNNLQYCRQPEGFLQRNNIALENSYNPAEVSSQENAINYGPEGNGLPSHWMML 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91770117 91773787 + Tan0019525.2 Tan02g2290 744916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2290 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 FunFam MADS-box transcription factor 1 13 85 - -
Tan02g2290 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 Pfam K-box region 85 159 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2290 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g2290 225 ProSiteProfiles K-box domain profile. 87 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2290 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan02g2290 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2290 225 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2290 Tan-Chr2:91770117 Tan04g1892 Tan-Chr4:61851614 6.30E-53 dispersed
Tan02g2289 Tan-Chr2:91770117 Tan02g2290 Tan-Chr2:91770117 9.90E-121 tandem
Tan02g2290 Tan-Chr2:91770117 Tan02g2291 Tan-Chr2:91795402 1.10E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26823 PF01486 K-box 3.30E-23 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2290 K09264 - csv:101220998 360.147