Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2291 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAATAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCAGATTCCAGCATGGAGAGAATCCTCGAACGATATGAGAGATATTCTTATGTGGGCAGGCAACAAGTTGCAGCTTCTGAATCTGAATTTTCTCAAGAAAATTGGACTCTTGAATATTACAGACTCAAATCCAAAGTGGAACTCTTACAACGAAACAACAGCCATTATATGGGAGAAGATTTGGATTCATTGAGTGTAAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGTTCGAGAAAAAACCAACTTATGTATGACTCCATCTCTGCACTTCAGAGAAAGGAAAGAGCAATACAAGAGCAAAACATCCTACTGGCAAAGCAGATCAAGGAGAAGGAGAAAAGTGTAGCAATGGCTCAGCAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTGTCTTTCTTATTCCCATCAGCTCCTCATCCATCTCTAAACATTGGGCTTGCGAGTTTTGATGGTCACCCATGA 672 40.77 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMERILERYERYSYVGRQQVAASESEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNILLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPSAPHPSLNIGLASFDGHP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91795402 91802707 + Tan0010848.1 Tan02g2291 744917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2291 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan02g2291 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 Coils Coil 127 147 - -
Tan02g2291 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2291 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g2291 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan02g2291 223 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan02g2291 223 Coils Coil 156 176 - -
Tan02g2291 223 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2291 Tan-Chr2:91795402 Tan05g2334 Tan-Chr5:74774199 1.10E-68 dispersed
Tan02g2290 Tan-Chr2:91770117 Tan02g2291 Tan-Chr2:91795402 1.10E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26824 PF01486 K-box 8.10E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2291 K09264 - csv:101219414 392.119