Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2310 ATGAGAACGGGGAAAAGCAATCATGAAGACGAAGAGTACGACGAGGACGAGCTGGTTGCTAAAAAAGAGGGGCCTGCTTCTACTTCCAACGCTAATAGTAACATCGGAAACAACAAAGATGCGAAGAACAATGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGCGTCATTCTTATTGGAGGTGATCGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAGTATGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTGATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTATTCAGGGAAGTTTGATGACAACAACATTCCAATTTCACCAGCCATGCTTGGAAGCTCACAAAACCCTCTCGAGTCCCATGCAGGCAGAGATATTCTTCAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATATACATACTTCTATCCGTAGTGTTGGCGTGCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACAACGGAGTGTCCCATCACCAACAATGCATCAAACCAACTGGAGGAGACTGCTATTGAAGGGGGCACAATAAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCGAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCGGCCACCCAACAATGGTGCATGTAGGGGACCTGGGCAGTGGAGACGACTCAGATCAAGCTAAAAAGCGGCTAAGGACATGA 999 45.15 MRTGKSNHEDEEYDEDELVAKKEGPASTSNANSNIGNNKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNIPISPAMLGSSQNPLESHAGRDILQDADITNKVPLPMSLEGNIHTSIRSVGVLDQSLHIPISDAQTTECPITNNASNQLEETAIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSGHPTMVHVGDLGSGDDSDQAKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91874143 91878950 - Tan0014807.1 Tan02g2310 744936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2310 332 MobiDBLite consensus disorder prediction 44 62 - -
Tan02g2310 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Tan02g2310 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Tan02g2310 332 FunFam BHLH domain class transcription factor 47 119 - -
Tan02g2310 332 MobiDBLite consensus disorder prediction 25 43 - -
Tan02g2310 332 MobiDBLite consensus disorder prediction 302 332 - -
Tan02g2310 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Tan02g2310 332 CDD bHLH_AtBIM_like 48 124 - -
Tan02g2310 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Tan02g2310 332 MobiDBLite consensus disorder prediction 1 62 - -
Tan02g2310 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Tan02g2310 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 3 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2310 Tan-Chr2:91874143 Tan09g1999 Tan-Chr9:70699606 1.40E-61 dispersed
Tan02g2310 Tan-Chr2:91874143 Tan09g1998 Tan-Chr9:70699606 1.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26825 PF00010 HLH 1.80E-13 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2310 - - - 0.0