Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2350 ATGAGCAGTTTGAGGACGGTTTGCAGGCCTCATGCGATGTTTTCTTCCTTCTTATTTAGCAGCAGATGCCAGTCTATGCCCAGAGTTTCGTTTCGGAACCCTAATAACAAGCGTCGGTTTTCTGTTTTCTCTCCCAGCTTCAATTCCTTGTCTGGCTTTTGTCGGACCGAGAAATGGTTCCGTATCAATCAGAGGAGGACGCTGGCCATGGCTTCCAATTGGGCTAACGAAAAATCTCCCTATGAAACTCTTGAGTTAGAGAGGGATGCTGATGAAGATCAGATAAAGAGTTCATATAGGCGCTTGGCCAAATTTTATCATCCGGATGTTTATGATGGTAGAGGAACTCTTGAAGAAGGAGAGACAGCTGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAGTTGCTGACAGATGATGAGAAGCGGAGGCAGTATGATGTAGATAACAGGGTTAATCCAATGAAGGCATCTCAAGCATGGATGGAGTGGCTTATCAAAAAACGCAAAGCTTTTGATCAACGGGGTGACATGGCAATAGCAGCTTGGGCTGAGCAACAGCAGCGCGAGATGAGTCTACGAGCACGGCGCCTTTCTCGATCAAAGGTAGATCCAGACGAAGAGAAAAGATTACTGGCAAAAGAAAAGAAGGCATCAGTAGAGTATTTTAACAGCACACTGAAGCGACACACACTTGTCTTGAAGAAGAGGGATTTAATGCGAAAAAAAGCAGAGGAAAAGAAAAAGGTAATAAGCCAACTTTTAGCTGAGGAAGGCTTCGAGCTTGATACCGACGACGATGACAACCTGTAG 813 44.77 MSSLRTVCRPHAMFSSFLFSSRCQSMPRVSFRNPNNKRRFSVFSPSFNSLSGFCRTEKWFRINQRRTLAMASNWANEKSPYETLELERDADEDQIKSSYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLTDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQREMSLRARRLSRSKVDPDEEKRLLAKEKKASVEYFNSTLKRHTLVLKKRDLMRKKAEEKKKVISQLLAEEGFELDTDDDDNL 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92180770 92183403 + Tan0009786.1 Tan02g2350 744976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2350 270 FunFam Chaperone protein dnaJ 65 170 - -
Tan02g2350 270 Gene3D DnaJ domain 65 163 IPR036869 -
Tan02g2350 270 SMART dnaj_3 78 142 IPR001623 -
Tan02g2350 270 CDD DnaJ 80 139 IPR001623 -
Tan02g2350 270 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Tan02g2350 270 ProSiteProfiles dnaJ domain profile. 79 150 IPR001623 -
Tan02g2350 270 SUPERFAMILY Chaperone J-domain 40 146 IPR036869 -
Tan02g2350 270 PRINTS DnaJ domain signature 81 99 IPR001623 -
Tan02g2350 270 PRINTS DnaJ domain signature 168 187 IPR001623 -
Tan02g2350 270 PRINTS DnaJ domain signature 99 114 IPR001623 -
Tan02g2350 270 PRINTS DnaJ domain signature 122 142 IPR001623 -
Tan02g2350 270 PANTHER CO-CHAPERONE PROTEIN DJLA 80 266 IPR050817 -
Tan02g2350 270 Pfam DnaJ domain 80 147 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2350 Tan-Chr2:92180770 Tan03g1630 Tan-Chr3:72466649 5.70E-08 dispersed
Tan02g2350 Tan-Chr2:92180770 Tan02g2351 Tan-Chr2:92181374 1.50E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40