Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2357 ATGGCAGCTTTTTCTCTCTCTAACTACACCCTCTTCTCTCCTCGCCCTGCTTCCTTCATTTCGTCTTCCTCCAAAACCCTAGAATCCACATCCTTTATTCAACCACCTATTTGCCTTCTTCATAATTCTCGCCATCGCTCTCGTCTTTGTAACCCATTATTAAGTTTCTCTCCCACCTCCCCTTCTTCTCCAGTTAGACGTTCTTTTGTATCGTGTCTTTCTGCTCAAGATTCTGTTGCCAATGTAAATAAAGAAGAGGATGATGGAAAAGCTGGGGATAAGGCAGGAGATCAGCTTCATGGATTGAGTTTGCTGGCCCTCATCAATGTATACCGAGAAGCATTTCTTGAAGGAGATCAAAAGACTGTTTCTGAAGTTGAGGCAAGACTAAAGATAATTGAGAGGGAGAAGGATGCGTTGTTCCAGAAAGTGTCCAATATATCGGCAGAGATAACATCTGGAAAAGAAAAACGCATACGCCTACAAGCTGATTTTGATAACTTTAGGAAAAGATCAGAAAAAGAAAGTCGTACGGTGAAGAATAATGCCCAAAAAGAGGTTATTGAGAGTCTGTTACCAATGATTGACAATTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACCGACAAGGAGAAAAAGATTGATGTCAGCTACCAGGGTATATACAAGCAATTTGTAGAGACGTTGAGGAGCTGGCGCGTCTCTGCGGTTGCCGCAGTAGGAAGGCCATTTGATCCCTCTTTACATGAAGCTGTAGCTCGAGAGGAGTCGCAAGAGATCAAGGAAGGGATCATTATTCAAGAATTACAACGCGGGTTTCTGCTTGGCGAACGACTTCTTAGACCAGCCAGAGTAAAAGTATCAAAAGCTCCAGGTAGGAAGAATTCCCCGACAATCGACTCCAAGAAACCGACCGAGCAATCTGCAACTGCTGCTGGAGTAGATGAACACTAA 957 43.36 MAAFSLSNYTLFSPRPASFISSSSKTLESTSFIQPPICLLHNSRHRSRLCNPLLSFSPTSPSSPVRRSFVSCLSAQDSVANVNKEEDDGKAGDKAGDQLHGLSLLALINVYREAFLEGDQKTVSEVEARLKIIEREKDALFQKVSNISAEITSGKEKRIRLQADFDNFRKRSEKESRTVKNNAQKEVIESLLPMIDNFEKARQQIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELQRGFLLGERLLRPARVKVSKAPGRKNSPTIDSKKPTEQSATAAGVDEH 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92240027 92243050 - Tan0016356.1 Tan02g2357 744983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2357 318 Gene3D Head domain of nucleotide exchange factor GrpE 235 290 IPR009012 GO:0006457(InterPro)
Tan02g2357 318 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 139 232 IPR013805 -
Tan02g2357 318 Hamap Protein GrpE [grpE]. 76 290 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 FunFam Protein GrpE 234 289 - -
Tan02g2357 318 Coils Coil 116 150 - -
Tan02g2357 318 Pfam GrpE 135 290 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 Gene3D - 118 231 IPR013805 -
Tan02g2357 318 ProSitePatterns grpE protein signature. 245 288 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 MobiDBLite consensus disorder prediction 287 318 - -
Tan02g2357 318 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 237 291 IPR009012 GO:0006457(InterPro)
Tan02g2357 318 CDD GrpE 155 288 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 PRINTS GrpE protein signature 187 202 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 PRINTS GrpE protein signature 269 288 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 PRINTS GrpE protein signature 159 175 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 PRINTS GrpE protein signature 242 257 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Tan02g2357 318 PANTHER GRPE PROTEIN 97 290 IPR000740 GO:0000774(PANTHER)|GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0042803(InterPro)|GO:0051082(PANTHER)|GO:0051087(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2357 K03687 - - csv:101215875 432.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3121 Tan-Chr1:84094136 Tan02g2357 Tan-Chr2:92240027 3.40E-07 dispersed
Tan01g3122 Tan-Chr1:84094136 Tan02g2357 Tan-Chr2:92240027 3.60E-07 dispersed
Tan02g2357 Tan-Chr2:92240027 Tan03g0544 Tan-Chr3:59950789 4.80E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28