Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2360 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTACAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGCAATGGCATCAAGACTAATGTGGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGGCCTGCTTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCACAATCCAAATTCGATGATAAGACTGGGACTTCTCTTGTAAATGGTGCACATGATACAGCAAAGCTGGCTGGTCTTCTCGAGAATTTCATCAAGAAATATGTTCAATGCTATGGATGTGGTAACCCTGAAACGGAGATTATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGACAAACTCACAACATTTATTCTCAAGAATCCCCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCCGAGAAGGAACGGCTTAAGGAGGGAGAGGCTGCTGATGAGGAGCAGAAGAAGCTAAAAAAGGATTCAGTGAAGAAGAAAAGCACTAGTGGTAATACAAAGGAACCTGTTACCAAAGTGCCAAGCAAGAAGAAGAATAATGGTTCGGACGAAGATCATTCCCCAACTCGTAGCCAAACTGGTGATAATGATCAAGCAGCTGACGACAATGATGACGATGACGACGTGCAGTGGCAAACAGACACATCTTTAGAGGCAGCTAAGCAGCGTATTCAGGAGCAATTGAGTGCAGTCACTGCTGATATGGTCATGCTCTCTACTGAAGAGAACAAGTCTTCTAAGAAGTCCCCTGAGCATGAGAAGTCCGCAGTCAATGGAAACAAGAATGGAAATGAAGTTTCTATTCATGGTGCCCTTGTTCATGAAATCAAAGATTATTTGAAGAAAGGTTCCTCTGCAGCCGACCTAAAATCATTTTTGGAATCACTTTCTGGAACTCGCCAAGAGATCATAAATGCCTTAGTTGATGCTCTATTTGACGGTGTTGGGAAAGGCTTCTCAAAGGAGGTGGTGAAAAAGAAGAACTTCTTGGCCGCAGCTGCTGCTCGGGAGGGATCACAGATAATTCTCTTGCGTGCCATTGAATCTTTCTGTCTCAATACGAGTCCGGACGCTGCCAAGGAGGTTGCGCTAGTCCTGAAATCATTGTATGACGGGGACGTGATCGAGGAAGAATTTGTACTAGAATGGTACCAGCAGGGCGTGGCTGGTGCCAACAAAAGCTCTCAAATCTGGAAGCACGTAAAACCCTTCATCGAATGGCTCCAGAATGCTGAATCGGAGTCGGAAGAAGAGTAA 1341 44.52 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDDKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKSTSGNTKEPVTKVPSKKKNNGSDEDHSPTRSQTGDNDQAADDNDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTEENKSSKKSPEHEKSAVNGNKNGNEVSIHGALVHEIKDYLKKGSSAADLKSFLESLSGTRQEIINALVDALFDGVGKGFSKEVVKKKNFLAAAAAREGSQIILLRAIESFCLNTSPDAAKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKHVKPFIEWLQNAESESEEE 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92265546 92266886 - Tan0018022.1 Tan02g2360 744986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2360 446 SUPERFAMILY ARM repeat 297 440 IPR016024 -
Tan02g2360 446 Coils Coil 159 179 - -
Tan02g2360 446 Gene3D - 290 446 - -
Tan02g2360 446 Gene3D - 2 104 - -
Tan02g2360 446 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Tan02g2360 446 CDD W2_eIF5 300 444 - -
Tan02g2360 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 442 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Tan02g2360 446 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Tan02g2360 446 MobiDBLite consensus disorder prediction 199 219 - -
Tan02g2360 446 SMART 542_3 355 442 IPR003307 GO:0005515(InterPro)
Tan02g2360 446 Pfam eIF4-gamma/eIF5/eIF2-epsilon 368 446 IPR003307 GO:0005515(InterPro)
Tan02g2360 446 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g2360 446 ProSiteProfiles W2 domain profile. 287 446 IPR003307 GO:0005515(InterPro)
Tan02g2360 446 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g2360 446 MobiDBLite consensus disorder prediction 148 190 - -
Tan02g2360 446 MobiDBLite consensus disorder prediction 268 292 - -
Tan02g2360 446 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g2360 446 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g2360 446 MobiDBLite consensus disorder prediction 143 238 - -
Tan02g2360 446 Gene3D - 105 145 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2360 K03262 - csv:101210873 754.207