Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2374 ATGGCTGCTTTGATGGATTTCTATGGTTGCAGAGATTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCTTCTTCTTCTTCTTCTTTCCTTCCTTCTTATTCTCCTTCTTCTTCATCTTCCATTCCTGATTTCTCTTCTTCAATCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGGCCCATTTATTTTCCGGCGGGTTTTCGGCCCAAAACCTTCACGGTTTAGAGCAATCAGCTTCAATTGGACTCAATTACTTGACCCCCTATCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACTCAGATTCAGCCGGTTTGGGGACAGATCAACAACCTATCGAAAAACCAGATCAACGGCGTGAATTTGCTTGGCCCGAAGGCGGTTCCGATGAAGCATGTGGGATCGCCGCCGAAATCGACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAATCGAACTCGGCTATGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTTTAGCTTACGACAAAGCCGCTTACAAGCTCCGAGGCGATTTCGCTAGACTCAATTTCCCTCACCTGAAGCACCACGGCTCCTCCGTCGGCGGCGACTTCGGCGAGTACAAGCCACTCCACTCCGCCGTCGATGCGAAGCTCGATGCCATCTGCCAGACCCTGGCCGAATCGCAGAAACAGGGGAAATCGGATCGATCTGCCTCCTCGAGGAAGTCGAAATCATCGGGTTCTTCTACGGCCAGATCGGAGTCTCAGGCGCCGACGGTGATTGATTCTGACGACGAACAGAAGACGTCGGAGGTCAGATCGAGTGGATCGGAGATCTGTTGTAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCTGAGAGCGACGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCCGATCCGACGGATTCGCCATGGGAACAGCCGTCGGAAAGCTCTATGTTGCAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACATGA 1095 51.78 MAALMDFYGCRDFQSDPFGGELMEALEPFMKAASSSSSSFLPSYSPSSSSSIPDFSSSIQTESTSYPSDCSPPMAHLFSGGFSAQNLHGLEQSASIGLNYLTPYQIQQIQSQFGLQTQIQPVWGQINNLSKNQINGVNLLGPKAVPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLDAICQTLAESQKQGKSDRSASSRKSKSSGSSTARSESQAPTVIDSDDEQKTSEVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92380634 92382621 + Tan0010249.1 Tan02g2374 745000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2374 364 MobiDBLite consensus disorder prediction 252 353 - -
Tan02g2374 364 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
Tan02g2374 364 SMART rav1_2 159 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 MobiDBLite consensus disorder prediction 298 353 - -
Tan02g2374 364 FunFam Ethylene-responsive transcription factor 2 158 217 - -
Tan02g2374 364 Pfam AP2 domain 159 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 CDD AP2 158 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 PRINTS Ethylene responsive element binding protein signature 182 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 PRINTS Ethylene responsive element binding protein signature 160 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 362 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan02g2374 364 ProSiteProfiles AP2/ERF domain profile. 159 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g2374 364 MobiDBLite consensus disorder prediction 266 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0233 Tan-Chr2:2047711 Tan02g2374 Tan-Chr2:92380634 6.10E-27 dispersed
Tan02g2374 Tan-Chr2:92380634 Tan05g0786 Tan-Chr5:5728761 3.30E-27 dispersed
Tan01g3972 Tan-Chr1:104567229 Tan02g2374 Tan-Chr2:92380634 3.10E-86 transposed
Tan06g2302 Tan-Chr6:74168551 Tan02g2374 Tan-Chr2:92380634 6.00E-28 transposed
Tan02g2374 Tan-Chr2:92380634 Tan03g1886 Tan-Chr3:74213822 3.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26838 PF00847 AP2 4.80E-15 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2374 K09286 - csv:101222833 536.569