Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2378 ATGACCAACCAGAAACCTGCTCTTCCGAACGGCAAATCCCGAATCGGTGTGGCCTTCACAGTCGCCATCTCGAGATCGGAGCATCTGGCCGGAATTGGGGAATTTGTGGCGAATATGTCGAAGAAGAAGCTTTTGAAGAGGAATGAAAATGGCGGAGGAGGGCGAGGCAGAGGCACAGCAGCCATTGCTTGCTCTGTTGATTTGATGAGAGCTTCTTCTCCGACCCGTCTCAACTCTGCTCTTTCTCTTTCACAATCTCCTGCTCAATCCCCTTGGATTTTTCAACTTCCGTCTGCACTCAACATGTTCGACCAAATTACAACTGCTTCTAAAGGCAAACAGATTGTTATGTTTTTGGATTATGATGGCACACTCTCCCCCATTGTTGAAGATCCCGATACTGCTTTCATGACGAATGAGATGAGAGCAGCGGTGAGAAACGTTGCAACATACTTCCCAACTGCCATAGTTAGCGGAAGGTGTAGAGACAAGGTGTATGATTTTGTAGGATTGGCAGAGCTGTTTTATGCTGGTAGCCATGGGATGGACATACAAGGGCCAACAAAAGACTACAAATACAAGAAAGCCAATGAAGCAGTGCTTTTCCAACCGGCAAGTGAGCTGCTACCCATGATTGACGAGGTACATAAAACCTTGTCAGATATAACAAAATCGATTACAGGAGCCAAAGTGGAAAACAACAAGTTCTGCATTTCTGTGCATTTTCGCTGCGTCGATGAAAAAAGATGGGGTGCATTAGCAGAGCAAGTTAAATCGGTGGTTAATCAGTATCCTAAACTCATTCTTACTTTAGGAAGAAAGGTATTAGAAATTCGGCCAGCAATTAAATGGGACAAAGGCAAAGCTTTGGAATTTTTGCTCGAGTCATTAGGATTTGCAAATTCTAGTGATGTTTTGCCTGTTTATATTGGAGATGATCGAACGGACGAGGATGCATTCAAGTTTTTGTGGGGTTGGAATTATTGA 987 44.07 MTNQKPALPNGKSRIGVAFTVAISRSEHLAGIGEFVANMSKKKLLKRNENGGGGRGRGTAAIACSVDLMRASSPTRLNSALSLSQSPAQSPWIFQLPSALNMFDQITTASKGKQIVMFLDYDGTLSPIVEDPDTAFMTNEMRAAVRNVATYFPTAIVSGRCRDKVYDFVGLAELFYAGSHGMDIQGPTKDYKYKKANEAVLFQPASELLPMIDEVHKTLSDITKSITGAKVENNKFCISVHFRCVDEKRWGALAEQVKSVVNQYPKLILTLGRKVLEIRPAIKWDKGKALEFLLESLGFANSSDVLPVYIGDDRTDEDAFKFLWGWNY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92414883 92418035 + Tan0004628.2 Tan02g2378 745004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2378 328 Pfam Trehalose-phosphatase 118 322 IPR003337 GO:0005992(InterPro)
Tan02g2378 328 NCBIfam trehalose-phosphatase 113 323 IPR003337 GO:0005992(InterPro)
Tan02g2378 328 Gene3D - 197 281 - -
Tan02g2378 328 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 56 323 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
Tan02g2378 328 FunFam Trehalose 6-phosphate phosphatase 115 201 - -
Tan02g2378 328 CDD HAD_TPP 116 323 - -
Tan02g2378 328 NCBIfam HAD-IIB family hydrolase 117 322 IPR006379 -
Tan02g2378 328 FunFam Trehalose 6-phosphate phosphatase 205 281 - -
Tan02g2378 328 Gene3D - 117 322 IPR023214 -
Tan02g2378 328 SUPERFAMILY HAD-like 116 323 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2378 K01087 - - csv:101223071 499.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2378 Tan-Chr2:92414883 Tan03g1877 Tan-Chr3:74189264 6.50E-107 dispersed
Tan02g2377 Tan-Chr2:92414883 Tan02g2378 Tan-Chr2:92414883 3.20E-179 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117