Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2409 ATGGCAACAAATAAAGTGCAATTGCTGTATAATATCTGCAATGAAATTTTTTCTCATAAACAGGCACCCACTTTTCAACAATTACACTCCCTCAAAAACCATCTCGATGGAATTGAAGCTGTAGATCTTGGAATTGAGGAGTTTGAAGAGCCAAAAGCTTCAATTCTGAGTCCCAAGGGATTGATTTATGCTAAAGGAATTTCAGAAATAACTTACATTCATATTCATGAATGCGACTTCTTCTCTATTGGAATATTTTGTTTCCCGGCGGGGGAGGCGCTGCCTTTACACGACCATCCGGGGATGACAGTGATGAGCAAGCTTTTGTATGGGTCTGTTCATGTGAAAGCCTACGATTGGATCAAAATGCACAGCTCTTCCAGTGGCCGAACGTGTAAGAATTTTTTTAACTGA 414 40.1 MATNKVQLLYNICNEIFSHKQAPTFQQLHSLKNHLDGIEAVDLGIEEFEEPKASILSPKGLIYAKGISEITYIHIHECDFFSIGIFCFPAGEALPLHDHPGMTVMSKLLYGSVHVKAYDWIKMHSSSSGRTCKNFFN 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92690454 92691016 - Tan0003498.1 Tan02g2409 745035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2409 137 PANTHER UNCHARACTERIZED 4 124 IPR012864 GO:0016702(InterPro)
Tan02g2409 137 SUPERFAMILY RmlC-like cupins 1 122 IPR011051 -
Tan02g2409 137 Pfam PCO_ADO 35 128 IPR012864 GO:0016702(InterPro)
Tan02g2409 137 Gene3D Jelly Rolls 2 134 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2409 K23953 - - vvi:100252387 167.162
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2409 Tan-Chr2:92690454 Tan05g0742 Tan-Chr5:5346386 4.60E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g441 . . . . . . . . . . . . . . . . . Bhi04g00776 Tan02g2409 . . . . Lcy13g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00979 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015283 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 2 1 12