Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2426 ATGGCCGTTACAACTAGCAGAAAACTTTTCTTTGCTGCTACAGGAACTAACCAACAAACCACCAATTGTTCTGGCTGTCCTTACGACTGCCCTTTCGACTGCTTCGATTTTCCAGATTTTTACTTCTCGCCGCCGCCAACGCCTCCTTACGCCGACCACCAAAAACAGCTTCAACCTTTCATCATCGTCCTAATTGCTCTGTTCGTCGGTTCTTTCTTCGCTTTCAGTTTATATATCGTTGTCGTTAAATGCCGGGCTTGGGGTAGTAGCTCCCGGAACATGGGGGCAGAGCCGTTGCAATCGGACGGTGGAGAGGGTGAGTTTCTGCACGAGAATCAAGTCGATCATCCAATTTGGTTTATCACCACCGTCGGGCTGCAACAATCGGTCATCAATTCAATCACGGTTTGCAAGTACAAGAAAAACGAGGGTCTGATCGAAGGAACAGATTGCTCTGTTTGTTTGAGCGAATTTCAAGAAGACGAAATGCTTCGGCTGTTGCCCAAATGCAGCCACGCCTTTCATATTGGGTGTGTGGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTGACTGATTTTGCGAGCTCCAATTCCATGAGATCCTCGAATTTGGGTCCTGTGAATCAAAACGAAGCTAATTTGAGCGTAATTGAAGAGACCCAGATGGAAAATCGGGAGATTAATGACGAAATTTTGAGAGAAAATCATGGTGTTTTCTCAGGTGAAAGTCTCGAAAACAGAGGAGATTTTGTTGATGAACAGAGAGATGTTGGGATTCAGATTGAAGGAAATGAGACTGTGATGAGGAACAATCAGATGGATTCTTCTTCTGCTGAGTTTGAAGAAGAAGGTAGATCAGTTAAAACAGCTACATGA 897 44.93 MAVTTSRKLFFAATGTNQQTTNCSGCPYDCPFDCFDFPDFYFSPPPTPPYADHQKQLQPFIIVLIALFVGSFFAFSLYIVVVKCRAWGSSSRNMGAEPLQSDGGEGEFLHENQVDHPIWFITTVGLQQSVINSITVCKYKKNEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFASSNSMRSSNLGPVNQNEANLSVIEETQMENREINDEILRENHGVFSGESLENRGDFVDEQRDVGIQIEGNETVMRNNQMDSSSAEFEEEGRSVKTAT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 92811132 92812310 + Tan0017167.1 Tan02g2426 745052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2426 298 SMART FANCL_C_2 147 201 - -
Tan02g2426 298 FunFam RING-H2 finger protein ATL54 126 199 - -
Tan02g2426 298 Pfam Ring finger domain 150 193 IPR001841 -
Tan02g2426 298 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Tan02g2426 298 SMART ring_2 151 192 IPR001841 -
Tan02g2426 298 SUPERFAMILY RING/U-box 141 199 - -
Tan02g2426 298 MobiDBLite consensus disorder prediction 277 298 - -
Tan02g2426 298 CDD RING-H2_EL5-like 150 193 - -
Tan02g2426 298 MobiDBLite consensus disorder prediction 283 298 - -
Tan02g2426 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Tan02g2426 298 PANTHER RING-H2 FINGER PROTEIN ATL16 44 276 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2426 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2426 Tan-Chr2:92811132 Tan07g1986 Tan-Chr7:71588916 1.80E-39 dispersed
Tan02g2426 Tan-Chr2:92811132 Tan02g2428 Tan-Chr2:92852365 9.70E-17 proximal
Tan02g1189 Tan-Chr2:27586647 Tan02g2426 Tan-Chr2:92811132 2.50E-35 transposed
Tan03g1831 Tan-Chr3:73817359 Tan02g2426 Tan-Chr2:92811132 1.90E-36 transposed
Tan01g3822 Tan-Chr1:103088646 Tan02g2426 Tan-Chr2:92811132 5.10E-15 wgd
Tan02g2426 Tan-Chr2:92811132 Tan03g1821 Tan-Chr3:73798784 2.50E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29