Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan02g2427 | ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTCAGTTATGTTTGCAGAGATTTCTGCTCTTACGGTGGAGCTTGGCCCAGCTACGACTATGGCTTCCAATTACAAGACGAAGAAAAAGCCTTTCTTGGAGACGACCAAAAATTGCTCCCTAATTGGGACGCTTCACCGGAGGAATCTTCCATCAATCAGCCACTCCCCCTAGGAGCTTTCTACCCGCCGGTGGAAGTCGAACCACCGCCGCCCCCACCGCCGCCGACCACCGGGAGGAGAAAGCGACGGCGGACTCGGAGTACAAAAAACAAGGAAGAAATTGAAAACCAGAGAATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGATTATCTCGCCGTCCTCCGATCACTAATGCCGTCTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAATTTTGTGAAGGAATTAGAACAGCAATTGCAATTCATTAAGGCCCATAAGAAAACAACACCTTCTTCCCCAATTGAAAATGCTTCCCCTTTTGCCGAGTTCTTTTCCTTCCCTCAGTTCTCAACTCGTGCCACTCAGTGCAAGAACTCGGCTCATGACTCAGCCATGGCTCACACCCAATGGGCCGCCGGAGATATTGAAGTCACCATGGTCGACAGTCATGCCAACCTTAAAATCCTGTCACAAAAACGCCCGAGGCAGCTTCTTAAAATGGTGGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACAACTTTGGATCAAATGGTTCTTTACTCTGTAAGCATCAAGGTTGAGGAAGGATGCCAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATCCTACTCTCCATTCAAGAGGAATCTGCTTTCAGCTGA | 921 | 48.1 | MMALETVVYPQDTFSYVCRDFCSYGGAWPSYDYGFQLQDEEKAFLGDDQKLLPNWDASPEESSINQPLPLGAFYPPVEVEPPPPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKKTTPSSPIENASPFAEFFSFPQFSTRATQCKNSAHDSAMAHTQWAAGDIEVTMVDSHANLKILSQKRPRQLLKMVAGFQSLRLTVLHLNVTTLDQMVLYSVSIKVEEGCQLNTVDEIAAAVNQILLSIQEESAFS | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 92816404 | 92818460 | - | Tan0015371.1 | Tan02g2427 | 745053 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan02g2427 | 306 | PANTHER | MAX DIMERIZATION, MAD | 61 | 296 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Tan02g2427 | 306 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 109 | 160 | IPR011598 | GO:0046983(InterPro) | |
| Tan02g2427 | 306 | CDD | bHLH_AtFAMA_like | 112 | 184 | - | - | |
| Tan02g2427 | 306 | SMART | finulus | 115 | 166 | IPR011598 | GO:0046983(InterPro) | |
| Tan02g2427 | 306 | MobiDBLite | consensus disorder prediction | 74 | 89 | - | - | |
| Tan02g2427 | 306 | MobiDBLite | consensus disorder prediction | 54 | 107 | - | - | |
| Tan02g2427 | 306 | Pfam | Helix-loop-helix DNA-binding domain | 110 | 161 | IPR011598 | GO:0046983(InterPro) | |
| Tan02g2427 | 306 | Gene3D | - | 101 | 173 | IPR036638 | GO:0046983(InterPro) | |
| Tan02g2427 | 306 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 109 | 175 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g2427 | Tan-Chr2:92816404 | Tan08g0533 | Tan-Chr8:5164846 | 4.10E-63 | dispersed | |
| Tan02g2427 | Tan-Chr2:92816404 | Tan10g0525 | Tan-Chr10:4203530 | 1.60E-38 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26840 | PF00010 | HLH | 2.10E-10 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan02g2427 | - | - | - | 0.0 |