Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2444 ATGGAATTTGACGATGAGCACGAAGACCAAGACGATGAAATAATGGAGGAGATGCCCATCGCCCACCACTACGACTCGCTGAGTAACTCAGCCTCAACTCGGGCCAAACCTGGAGAAGGGTCATCGGCGGCGAGGAAGATCGGCGGTGGCGGTGGCGGTGGAGGGAGTATTAGATACCGAGAGTGTTTGAAGAATCACGCCATCGGAATAGGAGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGGGGGAGAGGAAGGGAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGAATCAGATCAGGGACATAATTACTATTACCACCAGCAGCAGCAACAGTTTTCATCTTATCGTGGGCCCCCACCACACCCGTCTGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGAAGAGGCCGTTGGCGTTGCCGGCGGCGTCAGGGAGGGAGGAAGACGACACGTCGAATCCAAGCAGTAGCGGCGGCGGCGGAGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAACAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTTGGATGGACAATTCAGAAACACGACGACGCTGACGTGGAAAGGTTCTGTACGGAAACCGGAGTCCGGCGGCAGGTTCTAAAGGTATGGATGCACAACAATAAGCATACTTTGGGGAAGAAACCCTAG 738 54.07 MEFDDEHEDQDDEIMEEMPIAHHYDSLSNSASTRAKPGEGSSAARKIGGGGGGGGSIRYRECLKNHAIGIGGHAVDGCGEFMPGGEEGSIDALKCAACNCHRNFHRKETESDQGHNYYYHQQQQQFSSYRGPPPHPSAYVYLTGAPVQKRPLALPAASGREEDDTSNPSSSGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDDADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93022400 93023655 - Tan0002004.1 Tan02g2444 745070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2444 245 MobiDBLite consensus disorder prediction 1 53 - -
Tan02g2444 245 MobiDBLite consensus disorder prediction 1 15 - -
Tan02g2444 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Tan02g2444 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan02g2444 245 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Tan02g2444 245 Gene3D - 166 243 - -
Tan02g2444 245 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
Tan02g2444 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Tan02g2444 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Tan02g2444 245 FunFam Zinc-finger homeodomain protein 2 176 243 - -
Tan02g2444 245 MobiDBLite consensus disorder prediction 155 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1432 Tan-Chr1:14239354 Tan02g2444 Tan-Chr2:93022400 9.80E-44 dispersed
Tan02g2444 Tan-Chr2:93022400 Tan11g2213 Tan-Chr11:61205966 7.70E-44 dispersed
Tan01g1242 Tan-Chr1:11986197 Tan02g2444 Tan-Chr2:93022400 2.50E-39 transposed
Tan02g1974 Tan-Chr2:88483873 Tan02g2444 Tan-Chr2:93022400 1.00E-45 transposed
Tan03g1984 Tan-Chr3:74903103 Tan02g2444 Tan-Chr2:93022400 8.20E-45 transposed
Tan05g2155 Tan-Chr5:72287668 Tan02g2444 Tan-Chr2:93022400 1.60E-30 transposed
Tan02g2444 Tan-Chr2:93022400 Tan03g1814 Tan-Chr3:73750807 1.40E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26841 PF04770 ZF-HD_dimer 4.00E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2444 - - - 0.0