Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2444 ATGGAATTTGACGATGAGCACGAAGACCAAGACGATGAAATAATGGAGGAGATGCCCATCGCCCACCACTACGACTCGCTGAGTAACTCAGCCTCAACTCGGGCCAAACCTGGAGAAGGGTCATCGGCGGCGAGGAAGATCGGCGGTGGCGGTGGCGGTGGAGGGAGTATTAGATACCGAGAGTGTTTGAAGAATCACGCCATCGGAATAGGAGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGGGGGAGAGGAAGGGAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGAATCAGATCAGGGACATAATTACTATTACCACCAGCAGCAGCAACAGTTTTCATCTTATCGTGGGCCCCCACCACACCCGTCTGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGAAGAGGCCGTTGGCGTTGCCGGCGGCGTCAGGGAGGGAGGAAGACGACACGTCGAATCCAAGCAGTAGCGGCGGCGGCGGAGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAACAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTTGGATGGACAATTCAGAAACACGACGACGCTGACGTGGAAAGGTTCTGTACGGAAACCGGAGTCCGGCGGCAGGTTCTAAAGGTATGGATGCACAACAATAAGCATACTTTGGGGAAGAAACCCTAG 738 54.07 MEFDDEHEDQDDEIMEEMPIAHHYDSLSNSASTRAKPGEGSSAARKIGGGGGGGGSIRYRECLKNHAIGIGGHAVDGCGEFMPGGEEGSIDALKCAACNCHRNFHRKETESDQGHNYYYHQQQQQFSSYRGPPPHPSAYVYLTGAPVQKRPLALPAASGREEDDTSNPSSSGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDDADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93022400 93023655 - Tan0002004.1 Tan02g2444 745070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2444 245 MobiDBLite consensus disorder prediction 1 53 - -
Tan02g2444 245 MobiDBLite consensus disorder prediction 1 15 - -
Tan02g2444 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Tan02g2444 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan02g2444 245 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Tan02g2444 245 Gene3D - 166 243 - -
Tan02g2444 245 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
Tan02g2444 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Tan02g2444 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Tan02g2444 245 FunFam Zinc-finger homeodomain protein 2 176 243 - -
Tan02g2444 245 MobiDBLite consensus disorder prediction 155 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2444 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1432 Tan-Chr1:14239354 Tan02g2444 Tan-Chr2:93022400 9.80E-44 dispersed
Tan02g2444 Tan-Chr2:93022400 Tan11g2213 Tan-Chr11:61205966 7.70E-44 dispersed
Tan01g1242 Tan-Chr1:11986197 Tan02g2444 Tan-Chr2:93022400 2.50E-39 transposed
Tan02g1974 Tan-Chr2:88483873 Tan02g2444 Tan-Chr2:93022400 1.00E-45 transposed
Tan03g1984 Tan-Chr3:74903103 Tan02g2444 Tan-Chr2:93022400 8.20E-45 transposed
Tan05g2155 Tan-Chr5:72287668 Tan02g2444 Tan-Chr2:93022400 1.60E-30 transposed
Tan02g2444 Tan-Chr2:93022400 Tan03g1814 Tan-Chr3:73750807 1.40E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26841 PF04770 ZF-HD_dimer 4.00E-30 No_clan Tan TF