Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2449 ATGGCGCCTAGTTTTGACCTTGCTGTTTCGAGCCTTTTATGTGCTGAAGAGAATTGCATTTTCGATAATAACGATGATGATGATGAAACTGTAGTTGAGGAGTTTGTGATGGCTCCTTATTTTCTTAGAAGTAGAGGGATTCAGAGTCGTCGCAGCGGCGGCGGCGATGGGTTGCCGTTGATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCACCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGAGTTGGATGTCGGGGCTAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTATGTACATACTTAGCCGTAAACTACTTGGATCGCTTCCTCTCCGCTTACGATCTACCGAAAGGCAAAGCTTGGACAATGCAGTTGCTGGCTGTGGCATGTCTGTCCCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACCACATTGGGGTGGAGAATGCAGGCAGTTACCCCCTTCTCGTTTATCGATTATTACCTCCGCAAGATCCACAACGACGAACTCTCTGTCAAAATGTCGATCACCCGTTCGATTCGTCTACTATTGAGCATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTGGAGAAGCTCAAGCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACACCAAATGGAAAGAGTTTTGAAGTGCATTAAGTTAATTAATGACATGTCGTTGATCTGCGGGGGAGGGTCGGTGAAGGAGTCGAGAGCGTCAATGCAGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACATGCTTAAGCTATAAAAGCAATGATTCAGCAGTTGGGTCATGTGCAAATTCTTCACATCATAACAGTTCAGATGCTACAAAGAGGAGGAGATTAAACAGACCTTGTGAAGTGGAGCTATAG 1074 46.18 MAPSFDLAVSSLLCAEENCIFDNNDDDDETVVEEFVMAPYFLRSRGIQSRRSGGGDGLPLMSDECLIEMVEKETHHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACLSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDYYLRKIHNDELSVKMSITRSIRLLLSIIQGIDFLEFKPSEIAAAVAISVAGEAQAVDPERAIPLLIQQHQMERVLKCIKLINDMSLICGGGSVKESRASMQEPRSPSGVLDVTCLSYKSNDSAVGSCANSSHHNSSDATKRRRLNRPCEVEL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93112921 93115727 - Tan0022535.1 Tan02g2449 745075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2449 357 Pfam Cyclin, C-terminal domain 198 290 IPR004367 -
Tan02g2449 357 PANTHER CYCLINS 68 288 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan02g2449 357 SMART Cyclin_C_2 198 323 IPR004367 -
Tan02g2449 357 SMART cyclin_7 101 189 IPR013763 -
Tan02g2449 357 Gene3D - 79 196 - -
Tan02g2449 357 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Tan02g2449 357 FunFam D2/4-type cyclin 79 194 - -
Tan02g2449 357 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Tan02g2449 357 CDD CYCLIN_AtCycD-like_rpt2 198 286 - -
Tan02g2449 357 MobiDBLite consensus disorder prediction 340 357 - -
Tan02g2449 357 MobiDBLite consensus disorder prediction 328 357 - -
Tan02g2449 357 SUPERFAMILY Cyclin-like 181 291 IPR036915 -
Tan02g2449 357 Gene3D - 68 270 - -
Tan02g2449 357 FunFam D6-type cyclin 195 284 - -
Tan02g2449 357 Pfam Cyclin, N-terminal domain 68 195 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2449 Tan-Chr2:93112921 Tan04g1185 Tan-Chr4:11087699 1.60E-45 dispersed
Tan01g2830 Tan-Chr1:57946820 Tan02g2449 Tan-Chr2:93112921 1.10E-48 transposed
Tan02g2449 Tan-Chr2:93112921 Tan03g1812 Tan-Chr3:73728676 3.20E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2449 K18810 - csv:101216206 612.838