Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2451 ATGCCGCCACTTGGTGTGCATCTCTTCATTACTGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGATTCGACAACTTGCTTGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACATCGTTTGGAACCCATCAGCCTCCACAACTGGATCGTTTGATGTGATAAAGGCTACAGGTTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACAAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTATATAATGCTTCGGGGTTCCTCTGGGTTCTATTCATATGCTATTTACCAACACTTGAAAGAATGGCCTGGCTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATTCATGCCACTTCCAGATGACCGGTCTCCACCGAGAGGCCGAGCCCTGGCCTATCCGGAGGCTGTCCTGCTCGTCGACCCCGTTGAACCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAATATTCATGCGACAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCACCAGTCGGGTTCTGGCTAATCACCCCCAGCAATGAATTCCGGTCCGGTGGACCCGTTAAACAGAACCTGACTTCACACGTCGGCCCGACCACCCTTGCTGTTTTTATTAGCGCCCATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTTTTAGGTCCTGTGTTCATTTATCTCAACTCCACCTACGATTCCAGCGACTCACTTCAGCTCTGGGAAGATGCCAAATCTCAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGAAATATCAGTGGCAGACTACTAGTCAAAGACAGCTACGTTAGTGAAGACTGCATTCCAGCAAACGGTGCGTTTGTTGGGTTAGCTCCACCCGGAGACGTGGGATCGTGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGATATTTTTTCATCGACGGCGTAAGACCCGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTATGATGCTCTCGTCAACATTACAGAAGGTAGTGAGATAGACGTGGGTGACGTAATATACGAGCCTCCGAGAGAAGGGGATACACTATGGGAAATTGGAGTCCCCGATCGCTCAGCAGCAGAATTCTATGTGCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAAATACAGTGAATTGTATCCCGACGCGGACTTGGTATATACCGTTGGCGTCAGTGATTACACTAAGGATTGGTTCTTTGCTCAGGTCACCAGGAAGACAGAAAACGGAACATTCAAGGGAACGACATGGCAAGTGAAGTTCAAGCTGGACAACGTGGACAACAATGCAACTTACAAGCTTCGGATCGCATTAGCCTCCGCTTCTCTCGCGGAATTGCTGGTTGGAGTAAATGACCCGAAAGCGAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATTGCCAGGCACGGCATTCACGGGCTGCATTGGTTTTACAACGTGGACATTCCAGGCAACCGGCTGGTTACCGGCGACAACACAATCTTCTTCACACAGCCCAGAAGCACAAGCCCTTTCCAAGCCATTATGTACGATTATATTCGTCTGGAAGCTCCTCCAGAATAG 1902 48.74 MPPLGVHLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGFDNLLEVLNDESNRGYWDIVWNPSASTTGSFDVIKATGFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRYIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRFMPLPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSGVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEAWKKVLGPVFIYLNSTYDSSDSLQLWEDAKSQATIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDCIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFFIDGVRPGDYNLYAWVPGFIGDYRYDALVNITEGSEIDVGDVIYEPPREGDTLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWEKYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFKLDNVDNNATYKLRIALASASLAELLVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWFYNVDIPGNRLVTGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPE 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93136837 93143149 + Tan0006768.1 Tan02g2451 745077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2451 633 Gene3D - 329 428 - -
Tan02g2451 633 FunFam Rhamnogalacturonate lyase B 329 428 - -
Tan02g2451 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Tan02g2451 633 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Tan02g2451 633 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Tan02g2451 633 Gene3D - 8 302 IPR014718 GO:0030246(InterPro)
Tan02g2451 633 Gene3D - 438 629 - -
Tan02g2451 633 CDD RGL4_M 332 430 IPR029413 -
Tan02g2451 633 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Tan02g2451 633 Pfam Rhamnogalacturonate lyase family 7 201 IPR010325 -
Tan02g2451 633 SUPERFAMILY Starch-binding domain-like 330 429 IPR013784 GO:0030246(InterPro)
Tan02g2451 633 SUPERFAMILY Galactose mutarotase-like 19 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Tan02g2451 633 CDD RGL4_C 443 629 - -
Tan02g2451 633 CDD RGL4_N 13 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3868 Tan-Chr1:103541361 Tan02g2451 Tan-Chr2:93136837 3.30E-254 dispersed
Tan01g3869 Tan-Chr1:103555986 Tan02g2451 Tan-Chr2:93136837 1.20E-290 dispersed
Tan02g2451 Tan-Chr2:93136837 Tan03g1764 Tan-Chr3:73473345 1.40E-214 dispersed
Tan01g1463 Tan-Chr1:14826805 Tan02g2451 Tan-Chr2:93136837 9.60E-230 transposed
Tan03g2300 Tan-Chr3:77147054 Tan02g2451 Tan-Chr2:93136837 3.50E-186 transposed
Tan01g3867 Tan-Chr1:103533285 Tan02g2451 Tan-Chr2:93136837 8.10E-263 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2451 K18195 - csv:101215720 1197.96