Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2454 ATGCCTCGTCGGAGCTCCGGAGGACGATCTGCTTCCCGCCCCACCCCTCGCGCTCCACTACGCAATCCTCCGGCGCCAGCTAGTTCTGCTCCTCCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTTGGTGCCACTATTGCTCAAGGTATGGCCTTCGGTACCGGAAGTGCAGTGGCTCATAGGGCTGTTGATGCTGTAATGGGTCCACGGGTCATTGCACACGAGACTGTTGATTCATCAACTCCTTCAGTGCCTTCTATAGCGAGCAATCCTGGAGGTTCTGAAGCTTGTATTGTTCAATCAAAGGCCTTTGAAGATTGCCTGAACCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACTTGGATATGTTGAAGCAATGTCGCAGCGGCTCAGGTTCTGTTTTGGGTGCTTAA 435 53.79 MPRRSSGGRSASRPTPRAPLRNPPAPASSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIAHETVDSSTPSVPSIASNPGGSEACIVQSKAFEDCLNHYGSDIGKCQFYLDMLKQCRSGSGSVLGA 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93181704 93183827 + Tan0012995.1 Tan02g2454 745080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2454 144 MobiDBLite consensus disorder prediction 1 45 - -
Tan02g2454 144 Pfam CHCH domain 103 136 IPR010625 -
Tan02g2454 144 SUPERFAMILY Cysteine alpha-hairpin motif 101 135 IPR009069 -
Tan02g2454 144 PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 1 140 - GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0007005(PANTHER)
Tan02g2454 144 MobiDBLite consensus disorder prediction 17 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2454 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g536 . . . . . . . . . Cmo12g00164 . . . Car12g00191 Sed04g0192 . Cpe07g00179 Bhi04g01401 Tan02g2454 Cmetu03g0187 . Hepe10g0442 . Lcy13g1492 . . . . . . . . . . . . . . . . . . . . Bpe05g00436 . . . . . Cma12g00210 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011813 2 1 2 1 2 0 2 0 0 1 0 0 0 1 1 1 0 3 2 0 1 1 1 0 1 0 1 2 1 1 28