Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2465 ATGGCAGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGTGAATATGAAGATGGCGGCGGTGGCGGCGGCGGTGGTGACGTTATGGATGATGTCGATGAGGCTCATATGACTTCGGTGAGCGTCGCGAACCATGGGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCAGCAGTTACTCCCGAGAAGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 987 47.32 MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGDVMDDVDEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249038 93257826 - Tan0020695.2 Tan02g2465 745091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2465 328 SMART tify_2 65 100 IPR010399 -
Tan02g2465 328 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2465 328 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2465 328 PANTHER GATA TRANSCRIPTION FACTOR 28 16 301 IPR045280 GO:0006355(InterPro)
Tan02g2465 328 Pfam tify domain 68 99 IPR010399 -
Tan02g2465 328 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
Tan02g2465 328 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Tan02g2465 328 Gene3D - 196 254 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2465 328 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2465 328 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Tan02g2465 328 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Tan02g2465 328 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2465 328 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2465 328 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2465 Tan-Chr2:93249038 Tan02g2468 Tan-Chr2:93249720 9.20E-178 dispersed
Tan02g2465 Tan-Chr2:93249038 Tan02g2466 Tan-Chr2:93249038 8.10E-182 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26842 PF06203 CCT 2.50E-13 CL0281 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2465 - - - 0.0