Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2466 ATGGCAGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGTGAATATGAAGATGGCGGCGGTGGCGGCGGCGGTGGTGACGTTATGGATGATGTCGATGAGGCTCATATGACTTCGGTGAGCGTCGCGAACCATGGGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCAGCAGTTACTCCCGAGAAGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 987 47.32 MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGDVMDDVDEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249038 93257826 - Tan0020695.4 Tan02g2466 745092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2466 328 SMART tify_2 65 100 IPR010399 -
Tan02g2466 328 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2466 328 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2466 328 PANTHER GATA TRANSCRIPTION FACTOR 28 16 301 IPR045280 GO:0006355(InterPro)
Tan02g2466 328 Pfam tify domain 68 99 IPR010399 -
Tan02g2466 328 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
Tan02g2466 328 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Tan02g2466 328 Gene3D - 196 254 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2466 328 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2466 328 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Tan02g2466 328 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Tan02g2466 328 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2466 328 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2466 328 MobiDBLite consensus disorder prediction 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2466 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2466 Tan-Chr2:93249038 Tan02g2468 Tan-Chr2:93249720 9.20E-178 dispersed
Tan02g2465 Tan-Chr2:93249038 Tan02g2466 Tan-Chr2:93249038 8.10E-182 tandem
Tan02g2466 Tan-Chr2:93249038 Tan02g2467 Tan-Chr2:93249038 2.70E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26843 PF06203 CCT 2.50E-13 CL0281 Tan TF