Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2468 ATGGCAGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGTGAATATGAAGATGGCGGCGGTGGCGGCGGCGGTGGTGACGTTATGGATGATGTCGATGAGGCTCATATGACTTCGGTGAGCGTCGCGAACCATGGGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCAGCAGTTACTCCCGAGAAGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGGAACTCCTGAGGACCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCGTTGACCCAGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 47.59 MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGDVMDDVDEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249720 93257826 - Tan0020695.1 Tan02g2468 745094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2468 352 MobiDBLite consensus disorder prediction 310 332 - -
Tan02g2468 352 Pfam tify domain 68 99 IPR010399 -
Tan02g2468 352 SMART tify_2 65 100 IPR010399 -
Tan02g2468 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2468 352 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Tan02g2468 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
Tan02g2468 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Tan02g2468 352 PANTHER GATA TRANSCRIPTION FACTOR 28 16 324 IPR045280 GO:0006355(InterPro)
Tan02g2468 352 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2468 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Tan02g2468 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2468 352 Gene3D - 196 254 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2468 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2468 352 MobiDBLite consensus disorder prediction 247 352 - -
Tan02g2468 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2468 352 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2465 Tan-Chr2:93249038 Tan02g2468 Tan-Chr2:93249720 9.20E-178 dispersed
Tan02g2466 Tan-Chr2:93249038 Tan02g2468 Tan-Chr2:93249720 9.20E-178 dispersed
Tan02g2468 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 dispersed
Tan02g2467 Tan-Chr2:93249038 Tan02g2468 Tan-Chr2:93249720 8.30E-154 tandem
Tan02g2468 Tan-Chr2:93249720 Tan02g2469 Tan-Chr2:93249720 6.20E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26845 PF06203 CCT 2.80E-13 CL0281 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2468 - - - 0.0