Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2469 ATGGCAGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGGATGACGACGGTGAATATGAAGATGGCGGCGGTGGCGGCGGCGGTGGTGACGTTATGGATGATGTCGATGAGGCTCATATGACTTCGGTGAGCGTCGCGAACCATGGGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCAGCAGTTACTCCCGAGAAGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGGAACTCCTGAGGACCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCGTTGACCCAGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 47.59 MAAANPQPLQARPFQEHVQVPTMMGDDDGEYEDGGGGGGGGDVMDDVDEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249720 93257826 - Tan0020695.3 Tan02g2469 745095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2469 352 MobiDBLite consensus disorder prediction 310 332 - -
Tan02g2469 352 Pfam tify domain 68 99 IPR010399 -
Tan02g2469 352 SMART tify_2 65 100 IPR010399 -
Tan02g2469 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2469 352 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Tan02g2469 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
Tan02g2469 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Tan02g2469 352 PANTHER GATA TRANSCRIPTION FACTOR 28 16 324 IPR045280 GO:0006355(InterPro)
Tan02g2469 352 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2469 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Tan02g2469 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2469 352 Gene3D - 196 254 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2469 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2469 352 MobiDBLite consensus disorder prediction 247 352 - -
Tan02g2469 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2469 352 MobiDBLite consensus disorder prediction 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2469 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2467 Tan-Chr2:93249038 Tan02g2469 Tan-Chr2:93249720 8.30E-154 dispersed
Tan02g2469 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 1.10E-54 dispersed
Tan02g2468 Tan-Chr2:93249720 Tan02g2469 Tan-Chr2:93249720 6.20E-196 tandem
Tan02g2469 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26846 PF06203 CCT 2.80E-13 CL0281 Tan TF