Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2470 ATGAGAGAGAAAAGCAGACAGACAGAGAAACAGAGGACAGAGGGAGACAGACTTTTGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGGAACTCCTGAGGACCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCGTTGACCCAGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 846 45.51 MREKSRQTEKQRTEGDRLLVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249720 93257826 - Tan0020695.6 Tan02g2470 745096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2470 281 MobiDBLite consensus disorder prediction 176 281 - -
Tan02g2470 281 CDD ZnF_GATA 132 176 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 ProSiteProfiles CCT domain profile. 62 104 IPR010402 GO:0005515(InterPro)
Tan02g2470 281 Pfam CCT motif 62 103 IPR010402 GO:0005515(InterPro)
Tan02g2470 281 Gene3D - 125 183 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2470 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 177 - -
Tan02g2470 281 ProSiteProfiles GATA-type zinc finger domain profile. 127 175 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 SMART GATA_3 127 180 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 MobiDBLite consensus disorder prediction 239 261 - -
Tan02g2470 281 PANTHER GATA TRANSCRIPTION FACTOR 28 10 253 IPR045280 GO:0006355(InterPro)
Tan02g2470 281 Pfam GATA zinc finger 133 169 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 ProSitePatterns GATA-type zinc finger domain. 133 160 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2468 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 3.20E-46 dispersed
Tan02g2469 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 tandem
Tan02g2470 Tan-Chr2:93249720 Tan02g2471 Tan-Chr2:93259814 1.90E-38 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26847 PF06203 CCT 2.00E-13 CL0281 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2470 - - - 0.0