Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g2470 ATGAGAGAGAAAAGCAGACAGACAGAGAAACAGAGGACAGAGGGAGACAGACTTTTGGTACAAGCCGTGCTCTTACTTCTGGGAGGGCGTGATGTGCCAACCAGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTATACGGAAAGAAGTTGCCCAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTAATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCGGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAATTTTCGGGTATCCCGGATGAACATGGAACTCCTGAGGACCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCGTTGACCCAGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCAGATACCGATATAGACATCCCCACTAACTTTGATTAG 846 45.51 MREKSRQTEKQRTEGDRLLVQAVLLLLGGRDVPTSVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTIRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGDLTNSLPMRIVNHSTNGDEQEPLVELANPSDTDIDIPTNFD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 93249720 93257826 - Tan0020695.6 Tan02g2470 745096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g2470 281 MobiDBLite consensus disorder prediction 176 281 - -
Tan02g2470 281 CDD ZnF_GATA 132 176 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 ProSiteProfiles CCT domain profile. 62 104 IPR010402 GO:0005515(InterPro)
Tan02g2470 281 Pfam CCT motif 62 103 IPR010402 GO:0005515(InterPro)
Tan02g2470 281 Gene3D - 125 183 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g2470 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 177 - -
Tan02g2470 281 ProSiteProfiles GATA-type zinc finger domain profile. 127 175 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 SMART GATA_3 127 180 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 MobiDBLite consensus disorder prediction 239 261 - -
Tan02g2470 281 PANTHER GATA TRANSCRIPTION FACTOR 28 10 253 IPR045280 GO:0006355(InterPro)
Tan02g2470 281 Pfam GATA zinc finger 133 169 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g2470 281 ProSitePatterns GATA-type zinc finger domain. 133 160 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g2470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2468 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 dispersed
Tan02g2470 Tan-Chr2:93249720 Tan06g0031 Tan-Chr6:550954 3.20E-46 dispersed
Tan02g2469 Tan-Chr2:93249720 Tan02g2470 Tan-Chr2:93249720 1.50E-149 tandem
Tan02g2470 Tan-Chr2:93249720 Tan02g2471 Tan-Chr2:93259814 1.90E-38 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26847 PF06203 CCT 2.00E-13 CL0281 Tan TF